Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 3.7e-209 731.5 417 100.0
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 4.5e-199 698.0 418 95.9
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.7e-190 669.5 419 93.1
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.6e-175 619.8 433 86.6
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.7e-174 616.3 418 88.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-173 613.6 436 86.2
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 3.2e-173 612.1 440 85.5
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-172 608.6 438 85.8
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.6e-172 608.6 438 85.8
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 6.1e-172 607.8 419 87.8
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 3.7e-169 598.6 417 86.6
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.2e-167 593.6 428 84.8
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.2e-167 593.6 428 84.8
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.2e-167 593.6 428 85.5
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.7e-161 573.2 426 82.4
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.1e-160 570.5 398 86.2
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 5.4e-160 568.2 428 82.2
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.9e-159 564.7 398 86.9
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.5e-146 523.5 427 77.3
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 5.6e-141 505.0 346 87.9
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.8e-123 446.8 461 65.1
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 3.5e-119 432.6 459 63.6
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 7.8e-119 431.4 447 64.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 6.6e-118 428.3 405 68.9
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 6.6e-118 428.3 377 72.4
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 2.5e-117 426.4 415 68.4
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 7.3e-117 424.9 461 62.7
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.1e-116 423.3 444 64.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.8e-116 422.9 444 64.4
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 8.1e-116 421.4 385 70.6
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.4e-115 419.9 382 69.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.0e-114 416.8 377 71.4
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 4.5e-114 415.6 382 70.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 7.6e-114 414.8 453 61.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.3e-113 414.1 385 69.4
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.3e-113 414.1 449 62.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.7e-113 413.7 369 72.4
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.9e-113 412.9 365 72.6
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.9e-112 410.2 369 71.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 7.1e-112 408.3 386 68.4
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.6e-111 407.1 373 68.6
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.1e-111 406.8 378 69.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.9e-111 404.8 350 73.4
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.3e-110 403.3 382 68.3
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 3.9e-110 402.5 451 60.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 5.1e-110 402.1 420 63.6
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 6.7e-110 401.7 369 69.6
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.5e-109 400.6 340 74.7
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.5e-109 399.8 393 66.4
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.3e-109 399.4 379 67.8
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.4e-109 398.3 393 66.4
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.1e-108 396.7 393 66.4
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.8e-108 396.4 448 58.7
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 3.7e-108 396.0 374 67.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 6.2e-108 395.2 370 67.0
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 8.1e-108 394.8 375 67.7
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.1e-107 394.4 349 71.1
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.4e-107 394.0 378 67.2
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 9.0e-107 391.3 448 58.3
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 9.0e-107 391.3 374 67.4
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.2e-106 391.0 374 67.1
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.2e-106 391.0 315 76.8
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.5e-106 390.6 384 62.2
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.6e-106 389.8 343 71.1
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.6e-106 389.8 388 66.0
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 5.8e-106 388.7 374 66.8
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 7.6e-106 388.3 371 67.9
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 3.8e-105 386.0 373 67.0
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 6.4e-105 385.2 316 75.3
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 6.4e-105 385.2 384 64.1
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 8.4e-105 384.8 358 69.3
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 5.5e-104 382.1 381 65.4
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.7e-103 379.8 441 56.2
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 4.6e-103 379.0 377 64.5
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 7.9e-103 378.3 384 64.8
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.0e-102 377.9 373 64.6
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.3e-102 377.5 338 70.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.9e-101 373.6 315 73.3
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.5e-101 373.2 315 73.3
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 9.6e-101 371.3 383 64.0
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.3e-100 370.9 360 67.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.4e-99 366.7 345 67.2
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 5.3e-99 365.5 370 62.7
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.1e-96 357.8 399 63.4
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.4e-96 357.5 383 62.4
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.4e-96 357.5 333 68.2
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.5e-96 356.7 295 74.6
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.2e-96 355.9 315 70.8
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 5.5e-96 355.5 316 68.7
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 7.1e-96 355.1 317 70.0
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.1e-95 353.6 426 56.8
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 6.0e-95 352.1 322 70.2
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 7.9e-95 351.7 299 65.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 3.0e-94 349.7 254 74.0
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 8.2e-92 341.7 322 66.8
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.0e-91 338.2 368 62.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 2.2e-89 333.6 310 70.6
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 3.3e-85 319.7 256 68.0
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 2.8e-84 316.6 428 56.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 4.6e-79 299.3 306 64.1
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 4.4e-77 292.7 301 65.1
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.3e-76 291.2 368 57.3
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 8.2e-76 288.5 376 55.9
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 5.0e-65 252.7 222 66.7
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.5e-65 252.3 196 73.0
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 2.0e-61 240.7 158 79.7
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 2.9e-57 226.9 305 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 8.3e-52 208.8 308 47.7
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.1e-51 205.3 336 47.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 8.6e-49 198.7 237 48.1
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.1e-48 198.4 254 58.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.6e-47 193.4 224 49.1
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 8.0e-47 192.2 123 82.1
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.4e-43 181.4 222 64.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 6.1e-39 166.0 246 41.5
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 3.4e-37 160.2 178 64.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.2e-35 153.7 110 73.6
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.9e-33 146.7 233 39.9
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 5.2e-30 136.3 238 51.7
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 4.4e-29 133.3 77 89.6
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.7e-18 97.4 60 80.0
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 9.5e-16 89.0 150 50.7
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 4.9e-12 76.6 171 36.8


User provided reference genes

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