Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 6.2e-125 451.1 271 100.0
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.0e-99 366.3 272 74.6
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.1e-94 350.5 271 82.7
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 9.4e-81 304.3 272 73.5
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.2e-77 293.1 274 74.8
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.3e-71 273.1 274 67.9
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.7e-69 266.9 272 71.7
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.2e-69 266.5 274 66.8
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 7.7e-67 258.1 224 67.9
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 7.7e-67 258.1 224 67.9
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.3e-66 257.3 220 68.6
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 2.2e-66 256.5 272 69.1
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 4.4e-54 215.7 276 53.3
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 7.5e-38 161.8 271 55.4
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.3e-37 161.0 257 55.3
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.9e-37 159.8 256 52.7
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 4.9e-37 159.1 227 48.5
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.1e-36 157.9 258 49.2
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 3.2e-36 156.4 266 52.6
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.7e-35 153.3 279 51.6
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 6.0e-35 152.1 255 44.3
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 3.9e-34 149.4 257 54.9
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 3.9e-34 149.4 257 54.9
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.1e-33 147.9 279 53.0
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 5.6e-33 145.6 281 52.3
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 4.0e-31 139.4 206 47.1
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 4.0e-31 139.4 206 49.0
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 6.6e-26 122.1 272 46.7
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.1e-09 68.2 100 48.0
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.5e-09 67.8 125 43.2
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 2.5e-09 67.0 102 47.1
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.3e-09 66.2 100 45.0
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.6e-08 64.3 100 43.0
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.8e-08 63.5 102 44.1
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.8e-08 63.5 147 36.7
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 3.6e-08 63.2 126 38.1
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 3.6e-08 63.2 100 40.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 4.8e-08 62.8 127 35.4
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.1e-07 61.6 107 43.0
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 1.1e-07 61.6 101 40.6
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 1.4e-07 61.2 99 44.4
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 2.4e-07 60.5 100 42.0
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.1e-07 60.1 99 40.4
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 3.1e-07 60.1 129 34.9
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.1e-07 60.1 100 44.0
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 3.1e-07 60.1 102 38.2
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 4.0e-07 59.7 109 40.4
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 6.9e-07 58.9 206 32.5
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.5e-06 57.8 48 56.2
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.6e-06 57.0 126 39.7
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 2.6e-06 57.0 126 38.1
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.6e-06 57.0 98 37.8
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 2.6e-06 57.0 100 40.0
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 3.4e-06 56.6 121 38.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 4.5e-06 56.2 99 36.4
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 9.9e-06 55.1 110 35.5
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.9e-06 55.1 119 35.3


User provided reference genes

Program Settings