Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.1e-271 937.2 479 100.0
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.1e-269 931.8 479 99.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 6.0e-256 887.1 480 95.0
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.8e-245 851.7 480 92.9
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.2e-233 811.6 481 89.2
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 5.5e-233 810.8 483 89.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.7e-226 789.3 490 87.1
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 6.3e-205 717.6 496 79.8
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 5.0e-202 708.0 496 78.8
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 7.2e-201 704.1 500 79.4
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.7e-200 701.4 521 77.2
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 7.0e-180 634.4 565 66.7
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 7.8e-171 604.4 479 71.6
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 8.3e-165 584.3 480 69.2
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 6.6e-154 548.1 478 66.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 5.8e-150 535.0 477 64.8
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 5.8e-150 535.0 476 64.3
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.1e-147 526.6 481 64.7
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 2.1e-147 526.6 477 63.5
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.3e-146 523.1 478 64.0
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 1.5e-145 520.4 480 64.0
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 4.3e-145 518.8 481 63.0
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 6.8e-143 511.5 475 62.5
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.5e-142 510.4 484 63.6
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 3.4e-142 509.2 478 62.6
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 9.9e-142 507.7 477 62.3
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.2e-141 506.5 484 61.4
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.1e-140 504.2 477 61.8
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.9e-140 503.4 479 61.0
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 4.6e-139 498.8 478 61.3
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 7.8e-139 498.0 441 63.7
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 3.9e-138 495.7 477 58.9
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 6.6e-138 495.0 478 60.9
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-137 494.2 478 60.9
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.9e-137 493.4 479 60.1
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.3e-137 491.5 478 60.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 9.6e-137 491.1 476 62.0
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.6e-137 491.1 478 60.5
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.1e-136 490.0 478 60.5
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.8e-136 488.8 478 60.3
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-135 487.6 478 60.3
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 9.0e-135 484.6 480 60.2
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.2e-134 484.2 479 58.7
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 3.4e-134 482.6 481 58.2
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.3e-133 480.7 475 59.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.9e-133 479.6 480 60.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.8e-133 479.2 480 59.4
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.6e-131 473.8 481 57.8
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.7e-131 473.0 483 59.6
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 3.5e-131 472.6 478 58.4
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.5e-131 472.6 475 59.6
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 4.6e-131 472.2 478 57.5
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.0e-130 471.1 510 56.7
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.0e-130 471.1 476 58.0
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.0e-130 471.1 481 60.5
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.3e-130 469.9 481 57.8
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.1e-129 467.6 480 57.3
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.9e-129 466.8 497 57.1
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.5e-129 466.5 491 58.0
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 2.5e-129 466.5 497 56.7
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 2.8e-128 463.0 480 56.9
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 1.2e-126 457.6 504 54.6
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 3.4e-126 456.1 486 56.6
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 6.4e-125 451.8 481 56.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 8.4e-125 451.4 478 57.1
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 9.3e-124 448.0 534 52.1
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.9e-121 440.3 445 58.7
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.6e-121 438.7 541 52.7
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 7.4e-121 438.3 510 53.3
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 9.6e-121 438.0 516 52.9
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.8e-120 436.4 491 54.2
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.4e-119 434.1 478 55.2
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 2.4e-119 433.3 482 55.2
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.5e-118 430.6 490 55.1
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.0e-117 427.9 479 55.1
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.2e-117 426.8 503 52.3
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 6.5e-117 425.2 499 52.9
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.1e-116 424.5 492 53.5
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.4e-116 424.1 519 52.8
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.5e-116 423.3 521 51.4
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 4.2e-116 422.5 490 53.7
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 6.0e-115 418.7 483 54.0
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.7e-112 409.5 485 53.0
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 8.2e-112 408.3 375 62.7
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.1e-111 407.9 527 50.9
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.1e-111 407.9 507 53.1
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.1e-111 406.4 482 51.5
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 5.3e-111 405.6 554 49.5
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 7.6e-110 401.7 478 52.7
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 3.8e-109 399.4 554 49.1
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 5.1e-106 389.0 488 51.0
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.9e-105 387.1 445 53.5
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.5e-105 386.7 495 50.9
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.1e-103 379.4 483 51.6
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 4.5e-102 375.9 356 61.0
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.3e-101 374.4 356 60.1
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.5e-100 370.2 561 46.9
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 3.2e-100 369.8 488 49.0
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.9e-98 362.8 425 54.4
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 8.8e-98 361.7 542 45.9
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 9.1e-95 351.7 494 50.0
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 4.2e-92 342.8 437 49.7
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.4e-90 337.8 526 45.1
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.9e-90 336.3 523 44.9
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 8.8e-90 335.1 233 79.4
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-88 331.3 233 78.5
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.8e-87 327.4 331 58.9
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.2e-83 314.7 329 59.9
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.6e-83 313.2 225 76.9
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.5e-76 291.2 264 65.5
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 3.4e-65 253.4 258 57.4
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 8.3e-64 248.8 270 53.0
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.8e-58 229.2 176 65.9
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 3.9e-53 213.4 361 41.3
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.3e-52 210.3 220 57.7
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 9.5e-52 208.8 508 33.7
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.2e-47 192.2 446 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.2e-46 191.8 438 35.4
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.2e-46 191.8 128 79.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.2e-43 181.8 507 33.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 6.2e-35 152.9 494 31.4
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 7.6e-33 146.0 434 32.0
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.2e-32 144.4 377 35.5
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.2e-30 138.7 472 29.9
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.3e-28 130.2 450 29.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 6.2e-27 126.3 459 29.0
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 2.6e-25 120.9 160 50.0
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 6.4e-24 116.3 186 44.1
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-23 115.5 139 51.1
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 3.0e-21 107.5 86 70.9
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.7e-21 105.9 119 53.8
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 1.3e-16 92.0 66 71.2
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 2.2e-16 91.3 66 71.2
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 9.0e-10 69.3 109 46.8
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.6e-06 58.5 88 42.0


User provided reference genes

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