Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1371.7 774 100.0
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1312.7 778 92.3
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1307.4 778 92.0
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1290.0 778 87.7
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1286.2 778 90.9
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1271.9 778 93.4
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1231.5 778 87.3
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1205.7 778 85.6
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1205.3 778 83.9
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1196.0 771 83.3
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1192.6 778 84.7
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1178.3 771 81.1
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1177.9 772 84.6
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1169.5 778 82.0
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1162.9 784 82.9
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1154.8 772 84.1
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.4e-309 1064.7 778 75.8
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.3e-286 987.6 781 73.0
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.3e-271 937.6 778 68.9
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.7e-229 799.3 958 52.7
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.7e-220 770.0 737 61.1
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-172 610.9 435 76.8
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.6e-163 578.2 325 87.4
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-151 540.4 451 66.1
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.7e-147 525.8 688 48.5
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.0e-124 449.9 671 43.7
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.4e-121 440.7 733 40.9
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.2e-89 334.0 606 39.3
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 8.6e-87 325.9 251 76.5
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.3e-60 236.9 162 75.9
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.6e-59 233.0 329 45.3
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.1e-53 214.9 253 54.9
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.5e-49 200.3 291 41.6
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.2e-45 186.4 241 46.5
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.6e-43 179.9 232 38.4
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.4e-33 149.1 269 36.4
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.5e-33 148.3 100 69.0
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.6e-32 144.4 188 38.8
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 7.4e-30 136.7 690 23.8
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 6.3e-29 133.7 698 24.5
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.8e-28 132.1 93 73.1
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-28 132.1 143 42.7
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.7e-27 126.7 153 44.4
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.0e-26 126.3 228 33.8
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.1e-25 122.9 172 35.5
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 3.2e-25 121.3 192 36.5
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.2e-25 120.2 207 41.5
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 7.2e-25 120.2 236 35.6
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 2.1e-24 118.6 218 33.9
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 7.9e-24 116.7 349 27.8
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 7.9e-24 116.7 271 32.5
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-23 115.9 122 50.0
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 3.9e-23 114.4 276 32.6
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-22 111.7 203 32.5
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 4.4e-22 110.9 685 23.1
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 7.4e-22 110.2 208 30.3
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-21 109.4 208 30.3
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-21 108.6 213 34.7
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.8e-21 108.2 111 55.0
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 2.8e-21 108.2 261 32.2
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 8.2e-21 106.7 727 22.7
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-20 106.3 202 29.7
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-20 105.1 182 33.5
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 5.3e-20 104.0 174 33.3
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 9.1e-20 103.2 707 21.2
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-19 102.4 269 30.9
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-19 101.7 228 30.3
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 3.4e-19 101.3 152 38.8
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.5e-19 100.9 122 41.0
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 2.9e-18 98.2 175 33.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.9e-17 95.5 157 35.7
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.5e-17 95.1 754 20.8
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.5e-17 95.1 95 56.8
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 3.2e-17 94.7 149 35.6
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-17 94.0 174 31.6
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-16 92.0 160 31.9
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 3.6e-16 91.3 182 31.9
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 3.6e-16 91.3 187 33.2
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 4.7e-16 90.9 160 31.2
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-15 89.7 157 30.6
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-15 88.2 167 32.9
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 3.0e-15 88.2 301 30.2
CARHR289250 Cardamine hirsuta HOM05D020629 ORTHO05D022218 3.0e-15 88.2 315 28.3
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 5.2e-15 87.4 208 28.8
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 6.7e-15 87.0 255 27.5
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 2.0e-14 85.5 285 27.4
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 5.7e-14 84.0 255 26.7
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 9.7e-14 83.2 101 45.5
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.3e-13 82.8 209 26.3
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.7e-13 82.4 325 24.3
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.7e-13 82.4 325 23.1
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 1.7e-13 82.4 288 27.4
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 2.8e-13 81.6 285 26.0
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 4.8e-13 80.9 206 29.6
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 6.3e-13 80.5 285 26.7
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 8.2e-13 80.1 206 29.1
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 1.1e-12 79.7 206 29.1
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 1.1e-12 79.7 222 27.5
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.4e-12 79.3 321 25.5
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.4e-12 79.3 190 27.9
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-12 79.3 214 29.9
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-12 79.0 161 31.1
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-12 78.6 332 26.2
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 2.4e-12 78.6 203 29.6
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 2.4e-12 78.6 194 29.9
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 9.1e-12 76.6 174 27.0
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-11 76.3 173 28.9
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 3.5e-11 74.7 209 27.8
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.5e-11 74.3 66 50.0
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.7e-11 73.6 63 57.1
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 1.3e-10 72.8 145 33.1
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 1.3e-10 72.8 200 27.0
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 3.8e-10 71.2 186 25.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.5e-10 70.5 208 26.0
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-09 69.7 177 29.4
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-09 69.3 149 30.9
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 1.9e-09 68.9 200 26.5
CARHR034160 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.9e-09 68.9 201 30.8
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 3.2e-09 68.2 123 35.0
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 3.2e-09 68.2 173 30.1
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 3.2e-09 68.2 193 26.9
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-09 67.8 138 32.6
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 4.2e-09 67.8 258 24.8
CARHR183560 Cardamine hirsuta HOM05D020629 ORTHO05D022218 4.2e-09 67.8 160 35.0
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 7.2e-09 67.0 149 31.5
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 7.2e-09 67.0 196 28.6
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 7.2e-09 67.0 224 23.2
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 9.4e-09 66.6 184 24.5
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-08 66.2 193 27.5
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-08 66.2 118 33.1
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 1.6e-08 65.9 144 31.2
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.1e-08 65.5 170 25.3
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 3.6e-08 64.7 81 39.5
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 6.1e-08 63.9 180 27.2
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.1e-08 63.9 63 50.8
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 8.0e-08 63.5 187 27.3
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 8.0e-08 63.5 123 31.7
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 1.0e-07 63.2 154 28.6
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 1.4e-07 62.8 265 26.4
BcaC02g10884 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-07 62.4 123 32.5
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-07 62.4 110 33.6
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 1.8e-07 62.4 147 27.9
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.3e-07 62.0 170 24.7
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 3.0e-07 61.6 187 26.7
BcaC03g16343 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-07 61.2 123 32.5
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.0e-07 61.2 153 28.8
Carub.0004s0637 Capsella rubella HOM05D009492 ORTHO05D011693 5.2e-07 60.8 197 28.9
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 5.2e-07 60.8 101 32.7
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 6.7e-07 60.5 115 33.0
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 8.8e-07 60.1 173 27.7
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 8.8e-07 60.1 118 28.0
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 8.8e-07 60.1 218 22.0
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-06 59.7 123 30.1
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-06 58.9 101 33.7
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.6e-06 58.5 65 41.5
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 3.3e-06 58.2 76 38.2
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 4.4e-06 57.8 101 30.7


User provided reference genes

Program Settings