Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.9e-119 430.6 216 100.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.8e-112 407.9 230 92.2
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-109 398.7 225 92.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.7e-59 231.9 255 57.3
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 8.9e-58 227.6 255 57.3
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.4e-57 225.7 255 56.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.3e-53 213.0 256 54.3
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-51 206.8 256 53.1
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.6e-51 206.8 256 53.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-51 205.7 256 53.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.6e-51 205.7 256 53.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.6e-51 205.7 256 53.1
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.4e-50 203.8 255 52.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.3e-50 203.0 256 52.7
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.2e-48 196.4 257 52.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.2e-48 196.4 255 51.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.3e-45 186.4 240 50.8
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.1e-44 184.1 258 50.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 7.3e-44 181.4 260 49.2
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-43 178.7 258 49.2
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 2.4e-42 176.4 259 49.0
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 5.1e-37 158.7 239 43.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.1e-36 157.5 229 46.3
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.6e-35 153.7 242 43.4
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.1e-34 151.0 239 42.3
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-34 150.2 76 98.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.3e-32 144.1 238 41.2
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 3.8e-32 142.5 242 40.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.9e-32 142.1 239 40.6
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 8.4e-32 141.4 255 40.0
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.4e-32 141.4 239 41.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 8.4e-32 141.4 239 40.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.1e-31 141.0 239 40.6
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.4e-31 140.6 239 41.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.9e-31 140.2 239 41.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.2e-31 139.4 239 40.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.2e-31 139.4 251 39.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 4.2e-31 139.0 239 41.0
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.4e-31 138.7 255 37.6
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.4e-31 138.7 255 37.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 7.1e-31 138.3 239 40.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.1e-31 138.3 255 38.8
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.2e-30 137.5 241 39.8
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.1e-30 136.7 271 37.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.5e-30 136.0 216 43.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 7.9e-30 134.8 239 41.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 7.9e-30 134.8 239 40.6
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 7.9e-30 134.8 239 40.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-29 134.4 237 38.8
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-29 134.4 237 38.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-29 134.4 237 38.8
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-29 134.0 239 38.9
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-29 134.0 182 46.2
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.8e-29 133.7 239 38.5
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.8e-29 133.7 239 40.2
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.3e-29 133.3 239 39.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.3e-29 133.3 239 38.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.9e-29 132.5 239 39.3
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.9e-29 132.5 242 40.1
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.9e-29 132.5 237 39.2
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 6.7e-29 131.7 239 38.9
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 8.7e-29 131.3 256 37.1
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 8.7e-29 131.3 239 40.6
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.1e-28 131.0 239 38.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.1e-28 131.0 239 39.7
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.5e-28 129.8 240 38.8
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.5e-28 129.8 239 38.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 3.3e-28 129.4 239 38.5
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.3e-28 129.4 256 36.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 4.3e-28 129.0 237 38.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 4.3e-28 129.0 241 38.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.3e-28 129.0 265 36.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.4e-28 128.3 255 37.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.3e-27 127.5 239 39.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.6e-27 127.1 239 38.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.8e-27 126.3 243 39.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.6e-27 125.9 239 38.5
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.6e-27 125.9 238 37.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 8.1e-27 124.8 239 37.7
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.4e-26 123.2 240 38.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-26 123.2 260 37.3
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 4.0e-26 122.5 250 37.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.0e-26 122.5 255 36.9
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.0e-26 122.5 263 36.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.9e-26 121.7 254 35.8
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.9e-26 121.7 263 36.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.0e-26 121.3 260 36.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.2e-25 120.9 239 36.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.0e-25 120.2 239 35.6
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.6e-25 119.8 254 34.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.4e-25 119.4 250 36.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-25 119.4 223 39.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 7.6e-25 118.2 235 37.9
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 7.6e-25 118.2 255 35.7
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.7e-24 117.1 254 35.8
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.9e-24 116.3 273 34.4
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.8e-24 115.9 255 33.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 8.4e-24 114.8 239 34.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.1e-23 114.4 239 35.6
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.4e-23 114.0 255 33.3
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.4e-23 113.2 256 33.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.4e-23 113.2 239 36.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 4.2e-23 112.5 239 34.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.5e-23 112.1 239 35.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.1e-22 110.2 205 39.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.7e-22 109.8 265 34.7
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.5e-22 109.4 212 36.8
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 6.0e-22 108.6 290 31.7
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.9e-21 105.9 253 32.4
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.9e-21 105.9 253 32.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.1e-20 104.4 259 32.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.1e-19 100.1 259 31.7
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 8.1e-19 98.2 241 36.5
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 5.8e-17 92.0 239 35.6
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.5e-15 86.7 153 39.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 5.5e-15 85.5 186 37.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.6e-14 84.0 188 29.3
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.6e-14 82.4 197 34.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 7.9e-14 81.6 71 59.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.0e-13 81.3 131 41.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.9e-13 79.3 128 40.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 7.4e-12 75.1 235 26.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.6e-11 73.9 179 33.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-11 73.6 117 39.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.1e-11 73.6 72 51.4
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-11 73.6 197 33.0
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.8e-11 73.2 138 39.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.7e-11 72.8 259 27.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.7e-11 72.8 224 31.7
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.8e-11 72.4 137 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 6.9e-10 68.6 248 28.6
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.2e-09 67.8 261 26.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 7.6e-09 65.1 71 53.5


User provided reference genes

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