Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 8.0e-230 800.0 398 100.0
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.8e-213 745.7 398 92.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.2e-212 743.0 395 92.7
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.1e-210 736.5 398 91.0
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 2.3e-208 728.8 400 89.5
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.5e-207 726.1 400 90.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.6e-206 722.6 396 89.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 6.2e-206 720.7 400 88.2
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 4.0e-205 718.0 396 89.6
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 2.0e-204 715.7 400 88.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.7e-203 712.6 398 88.9
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-202 709.9 396 89.1
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.7e-192 676.0 398 84.2
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.9e-183 646.0 398 79.4
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.1e-167 593.6 390 74.1
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.9e-167 592.8 389 74.0
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.4e-165 585.9 397 71.8
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-164 582.4 392 72.4
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-164 582.4 397 71.3
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 9.3e-162 573.9 390 72.8
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.5e-159 566.6 394 68.5
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 7.4e-159 564.3 397 69.0
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.1e-157 560.5 389 70.4
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 9.0e-157 557.4 393 70.0
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.0e-155 553.9 389 68.9
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 5.0e-155 551.6 389 69.7
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.2e-153 547.0 392 67.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.2e-153 547.0 394 66.0
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.1e-153 546.2 389 69.7
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.0e-152 543.9 392 68.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.0e-152 543.9 393 68.4
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.4e-152 543.5 396 68.4
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 6.7e-152 541.2 419 66.6
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.5e-151 539.3 393 67.7
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.3e-151 538.9 393 65.9
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 7.4e-151 537.7 393 66.7
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 7.4e-151 537.7 393 66.7
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 9.7e-151 537.3 418 66.3
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.3e-150 537.0 397 65.2
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.7e-150 536.6 392 68.4
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.2e-150 536.2 392 67.1
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.8e-149 533.1 380 69.5
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 3.1e-149 532.3 449 60.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 9.1e-149 530.8 392 65.6
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 9.1e-149 530.8 392 66.6
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 7.7e-148 527.7 394 66.2
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.3e-147 526.9 420 62.1
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.3e-147 526.9 389 67.1
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.9e-147 525.8 409 64.3
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.8e-147 525.4 393 65.9
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.9e-146 523.1 390 65.6
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.6e-145 520.0 468 58.5
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 3.6e-145 518.8 392 65.1
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.4e-144 516.9 392 66.3
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 5.1e-144 515.0 387 64.9
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 5.7e-143 511.5 402 62.9
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 5.7e-143 511.5 391 65.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 7.4e-143 511.1 390 64.6
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.3e-142 510.4 389 64.8
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.3e-142 510.4 391 63.7
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 4.8e-142 508.4 397 63.0
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 7.0e-141 504.6 394 61.7
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.0e-139 500.7 391 63.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.7e-139 500.0 393 63.6
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 6.5e-139 498.0 392 61.2
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.5e-138 496.1 392 62.2
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 3.2e-138 495.7 367 66.2
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.1e-137 493.0 393 63.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.7e-137 492.7 393 60.8
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.6e-137 492.3 388 61.3
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.6e-137 492.3 358 68.7
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.3e-136 489.6 425 59.3
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.9e-136 488.8 425 58.8
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.7e-136 488.0 407 59.5
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 4.8e-134 481.9 391 61.9
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.1e-133 480.7 394 61.2
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.7e-131 473.4 402 59.2
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 9.4e-130 467.6 379 61.5
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 7.5e-127 458.0 331 67.4
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.4e-125 453.0 359 64.3
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 2.4e-125 453.0 393 56.2
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.2e-122 442.2 389 57.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.1e-121 439.9 382 58.6
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.6e-121 439.1 504 48.8
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.8e-118 428.7 443 52.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.1e-114 417.5 434 53.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.5e-114 417.2 350 56.6
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.4e-112 410.6 392 53.8
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 8.0e-105 384.8 391 52.7
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.8e-104 383.6 316 58.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.4e-103 379.4 283 64.3
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 4.1e-101 372.5 273 64.5
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.0e-99 367.9 294 63.9
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 5.6e-98 362.1 401 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.8e-97 359.8 399 47.4
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.1e-92 343.6 394 44.7
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 8.1e-89 331.6 248 68.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.4e-88 330.9 394 44.4
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.2e-87 327.8 296 55.1
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 8.6e-83 311.6 237 66.2
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.4e-80 303.5 221 66.5
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 4.0e-80 302.8 482 36.7
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 1.7e-75 287.3 239 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.5e-74 283.5 370 42.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 7.9e-68 261.9 200 65.5
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 8.7e-67 258.5 317 43.2
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 5.6e-58 229.2 148 71.6
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 2.6e-39 167.2 137 65.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 5.9e-39 166.0 535 26.5
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-36 157.1 119 65.5
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-36 157.1 119 65.5
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.7e-36 157.1 119 65.5
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-36 156.4 119 65.5
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.1e-36 156.0 119 64.7
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.1e-36 156.0 119 64.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.5e-34 150.6 103 68.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.8e-33 147.1 108 64.8
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.7e-33 146.7 100 70.0
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-32 145.2 103 66.0
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-31 141.0 80 83.8
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 7.7e-31 139.0 104 59.6
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 4.2e-29 133.3 79 77.2
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-28 131.0 172 41.9
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-27 128.3 81 72.8
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.7e-26 122.9 70 80.0
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.6e-23 114.8 108 55.6
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.5e-23 113.2 65 80.0
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.5e-23 113.2 65 80.0
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-22 111.7 65 78.5
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 5.5e-21 106.3 113 47.8
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-20 105.1 65 76.9
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.2e-20 105.1 293 25.3
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-20 105.1 253 33.2
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-19 102.1 65 72.3
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.4e-18 96.7 103 50.5
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 7.5e-18 95.9 71 59.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.3e-17 95.1 60 73.3
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-15 87.8 133 42.9
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 7.7e-15 85.9 69 58.0
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 6.1e-12 76.3 54 66.7
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 8.8e-11 72.4 61 47.5
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-10 70.9 65 55.4
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 9.8e-10 68.9 34 94.1
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 4.8e-09 66.6 42 71.4
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 1.3e-06 58.5 31 80.6


User provided reference genes

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