Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.7e-231 804.7 459 100.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.2e-186 656.0 471 84.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.2e-154 549.7 521 69.1
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.6e-134 481.9 479 67.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 9.2e-121 438.0 507 64.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-116 424.5 515 63.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.7e-80 303.5 589 45.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 6.9e-76 288.9 486 52.5
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.5e-74 282.3 563 49.9
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 5.1e-71 272.7 494 51.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 5.1e-71 272.7 494 51.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 9.7e-70 268.5 485 51.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.8e-69 266.9 587 44.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 8.2e-69 265.4 565 44.2
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-68 265.0 569 48.5
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 7.7e-67 258.8 507 51.1
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.7e-64 250.4 591 44.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-63 248.4 549 47.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 5.3e-60 236.1 544 45.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.2e-59 235.0 601 43.6
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.5e-59 234.6 575 45.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.3e-58 231.5 507 44.2
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.2e-58 230.7 568 39.1
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.9e-57 227.6 551 44.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.9e-57 227.6 579 38.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-56 224.2 552 44.4
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.6e-56 223.4 550 40.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 8.0e-56 222.2 479 47.6
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.6e-54 217.2 573 40.5
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.6e-54 217.2 622 40.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.6e-54 217.2 541 43.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.3e-54 216.9 633 39.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.3e-54 216.9 593 37.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 7.4e-54 215.7 566 40.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.2e-53 214.2 626 38.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.3e-53 212.6 613 39.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 8.2e-53 212.2 556 38.8
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.4e-52 211.5 584 40.1
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 4.1e-52 209.9 572 40.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 4.1e-52 209.9 536 43.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.3e-52 209.5 580 40.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-51 208.0 573 41.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.5e-51 206.8 600 36.7
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 3.5e-51 206.8 619 39.7
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.5e-51 206.5 600 36.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.5e-51 206.5 600 36.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 5.9e-51 206.1 631 39.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.9e-51 206.1 584 37.0
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-50 204.5 600 36.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.2e-50 204.1 621 38.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.0e-50 203.0 632 38.4
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 6.5e-50 202.6 635 36.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-50 202.6 591 39.9
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.1e-49 201.8 633 39.5
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.5e-49 200.7 586 37.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 3.2e-49 200.3 632 39.1
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.2e-49 200.3 654 37.0
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 4.2e-49 199.9 543 37.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 7.2e-49 199.1 560 41.2
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-48 198.4 598 35.6
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.1e-48 197.6 590 39.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.0e-47 193.7 604 38.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 5.2e-47 193.0 590 35.9
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.7e-47 192.6 616 36.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-46 191.4 564 40.6
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.0e-46 191.0 560 39.8
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.0e-46 191.0 609 36.9
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 4.4e-46 189.9 570 36.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.7e-46 189.5 547 39.3
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.7e-45 188.0 566 38.0
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.2e-45 187.6 631 38.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-45 186.8 558 38.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 3.7e-45 186.8 634 37.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 4.8e-45 186.4 628 37.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 8.2e-45 185.7 613 38.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.4e-44 184.9 627 37.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.4e-44 184.1 628 36.1
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.1e-44 183.3 530 35.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 7.0e-44 182.6 569 39.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 7.0e-44 182.6 549 37.2
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.5e-43 180.3 633 38.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.9e-42 177.2 630 36.5
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.9e-42 177.2 550 35.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.9e-42 177.2 655 34.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.9e-42 177.2 651 34.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.9e-42 177.2 442 37.6
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.8e-42 176.8 638 36.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-41 175.3 580 36.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.2e-41 173.3 452 38.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.6e-40 171.4 643 36.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.7e-40 170.6 495 35.8
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.7e-40 170.6 569 36.0
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.6e-40 170.2 548 40.3
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 6.1e-40 169.5 653 36.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.0e-39 168.7 660 36.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.4e-39 168.3 635 31.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.4e-39 168.3 590 37.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.8e-39 167.9 461 36.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.8e-39 167.9 602 37.4
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.2e-38 165.2 581 36.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 4.4e-38 163.3 555 34.8
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.3e-37 161.8 601 38.3
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-37 161.8 533 34.5
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.7e-37 161.4 654 36.4
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 4.8e-37 159.8 560 33.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 4.8e-37 159.8 479 35.5
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 6.3e-37 159.5 612 35.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 6.3e-37 159.5 473 35.9
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.1e-36 156.8 426 41.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.1e-36 156.8 473 35.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 5.4e-36 156.4 567 34.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 5.4e-36 156.4 481 34.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-35 155.2 565 33.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.9e-35 152.9 546 38.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 5.9e-35 152.9 524 33.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 8.6e-34 149.1 533 34.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.5e-33 147.5 406 36.7
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.2e-33 146.7 641 36.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 5.5e-33 146.4 608 34.2
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.2e-33 146.0 369 43.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.6e-32 144.8 611 34.9
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.6e-32 144.8 511 32.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.6e-32 144.8 417 35.3
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-32 144.4 597 33.3
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.2e-31 139.8 670 33.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.4e-30 137.1 599 32.6
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.4e-30 136.7 675 32.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.4e-30 136.7 672 33.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 7.5e-30 136.0 370 37.8
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.9e-29 133.3 657 30.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.9e-29 133.3 669 29.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 3.1e-28 130.6 318 38.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.2e-27 128.6 286 40.6
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.8e-26 123.6 531 31.1
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.5e-25 119.0 498 35.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-24 118.6 563 32.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.3e-23 114.4 441 34.9
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.0e-23 114.0 494 33.8
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.0e-23 113.6 540 33.5
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 8.9e-23 112.5 664 33.0
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.0e-22 111.3 427 37.5
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 4.4e-22 110.2 508 34.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.2e-21 107.8 506 31.0
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.6e-19 101.7 195 42.1
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.9e-18 97.1 560 29.8
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.0e-18 96.7 152 46.1
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.6e-18 96.3 559 26.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.1e-17 95.5 662 24.8
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-17 95.1 510 30.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 5.6e-17 93.2 177 37.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.6e-16 90.5 274 34.3
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 6.2e-16 89.7 92 64.1
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 2.0e-14 84.7 185 49.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.4e-14 83.6 298 37.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.3e-13 79.3 310 32.3
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 1.1e-12 79.0 220 45.9
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-12 78.6 176 38.6
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 9.2e-12 75.9 340 33.2
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 4.6e-11 73.6 172 40.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.7e-10 71.6 385 29.6
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 8.6e-10 69.3 139 39.6
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 1.1e-09 68.9 85 54.1
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 1.1e-09 68.9 85 54.1
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.1e-09 68.9 155 39.4
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 7.3e-09 66.2 172 40.7
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 2.8e-08 64.3 85 51.8
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.8e-07 61.6 453 30.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.8e-07 59.7 93 47.3
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 1.5e-06 58.5 80 50.0
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 9.9e-06 55.8 80 48.8


User provided reference genes

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