Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 6.1e-91 337.4 165 100.0
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.2e-48 196.1 156 69.2
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.4e-39 166.0 114 73.7
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 7.8e-38 161.0 115 73.9
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.3e-37 160.2 114 71.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-37 160.2 112 72.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 1.7e-37 159.8 113 71.7
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.7e-37 159.8 113 74.3
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.3e-37 159.5 113 71.7
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 5.6e-36 154.8 111 70.3
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 9.6e-36 154.1 129 65.9
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 9.6e-36 154.1 116 69.0
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 1.2e-35 153.7 127 66.1
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 1.4e-34 150.2 115 73.0
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 8.9e-34 147.5 108 69.4
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 8.9e-34 147.5 132 63.6
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.2e-33 147.1 118 67.8
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 2.5e-28 129.4 103 66.0
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 2.5e-28 129.4 103 66.0
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 9.6e-28 127.5 116 59.5
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 9.3e-23 110.9 71 76.1
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.6e-22 110.2 122 50.8
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.3e-20 102.4 113 53.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 7.4e-20 101.3 114 50.9
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.8e-19 99.4 113 46.9
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.6e-19 99.0 112 51.8
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.6e-19 99.0 119 43.7
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 4.8e-19 98.6 119 48.7
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 4.8e-19 98.6 110 45.5
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 8.1e-19 97.8 79 65.8
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.8e-18 96.7 116 44.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.1e-18 95.9 113 47.8
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.0e-18 95.5 105 46.7
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.9e-18 94.7 105 44.8
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 9.0e-18 94.4 130 39.2
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.2e-17 94.0 142 41.5
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.2e-17 94.0 117 44.4
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.5e-17 93.6 105 43.8
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 4.5e-17 92.0 99 55.6
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 5.8e-17 91.7 72 69.4
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 5.8e-17 91.7 108 45.4
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 9.9e-17 90.9 107 46.7
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.3e-16 90.5 146 35.6
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.7e-16 90.1 110 49.1
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.9e-16 89.4 114 39.5
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 2.9e-16 89.4 116 44.0
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.9e-16 89.4 113 43.4
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 3.8e-16 89.0 56 75.0
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.8e-16 89.0 120 44.2
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.9e-16 88.6 114 44.7
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 4.9e-16 88.6 105 43.8
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 6.4e-16 88.2 117 47.0
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.1e-15 87.4 117 41.0
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 1.9e-15 86.7 115 47.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.4e-15 86.3 123 38.2
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 2.4e-15 86.3 108 44.4
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.4e-15 86.3 119 46.2
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.2e-15 85.9 105 43.8
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.2e-15 85.9 108 38.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.2e-15 85.9 114 43.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 5.5e-15 85.1 105 43.8
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.1e-14 83.2 116 41.4
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.5e-14 82.4 99 41.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 6.0e-14 81.6 114 40.4
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.0e-14 81.6 114 40.4
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 6.0e-14 81.6 101 43.6
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.3e-13 79.7 120 37.5
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.0e-13 79.3 114 38.6
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.9e-13 79.0 96 44.8
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 5.1e-13 78.6 113 42.5
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.7e-13 78.2 123 36.6
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-12 77.4 114 37.7
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-12 77.4 114 37.7
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.5e-12 77.0 110 38.2
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.9e-12 76.6 118 37.3
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.3e-12 75.9 113 38.1
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 3.3e-12 75.9 112 38.4
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.3e-12 75.9 110 36.4
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 4.3e-12 75.5 114 37.7
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 4.3e-12 75.5 99 40.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.3e-12 75.5 106 41.5
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 9.6e-12 74.3 113 38.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.3e-11 73.9 107 41.1
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.6e-11 73.6 110 41.8
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 2.8e-11 72.8 102 42.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 6.2e-11 71.6 107 38.3
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.1e-10 70.9 111 39.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 5.3e-10 68.6 105 41.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 6.9e-10 68.2 122 36.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.6e-09 66.2 100 41.0
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 4.5e-09 65.5 109 38.5
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 7.6e-09 64.7 124 36.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 2.2e-08 63.2 120 30.8
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 4.9e-08 62.0 115 34.8
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.1e-07 60.8 130 30.8
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.9e-07 60.1 108 37.0
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.5e-07 59.7 111 33.3
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 5.5e-07 58.5 99 40.4
BraA06t24057Z Brassica rapa HOM05D003570 ORTHO05D004207 9.3e-07 57.8 45 68.9
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.0e-06 55.1 88 33.0


User provided reference genes

Program Settings