Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G22420 Arabidopsis lyrata HOM05D001680 ORTHO05D001596 1.5e-37 159.1 81 100.0
AL2G22470 Arabidopsis lyrata HOM05D001680 ORTHO05D001596 9.2e-24 113.2 73 80.8
Carub.0002s1134 Capsella rubella HOM05D001680 ORTHO05D001596 2.3e-22 108.6 73 76.7
AT1G65520 Arabidopsis thaliana HOM05D001680 ORTHO05D001596 3.9e-22 107.8 73 76.7
Sp5g20440 Schrenkiella parvula HOM05D001680 ORTHO05D001596 1.1e-19 99.8 73 71.2
BcaB04g19539 Brassica carinata HOM05D001680 ORTHO05D001596 3.1e-19 98.2 73 68.5
A02p13250 Brassica napus HOM05D001680 ORTHO05D001596 3.1e-19 98.2 73 67.1
BraA02t06382Z Brassica rapa HOM05D001680 ORTHO05D001596 3.1e-19 98.2 73 67.1
CARHR057230 Cardamine hirsuta HOM05D001680 ORTHO05D001596 4.0e-19 97.8 73 72.6
BcaC03g14708 Brassica carinata HOM05D001680 ORTHO05D001596 5.2e-19 97.4 73 65.8
C02p21430 Brassica napus HOM05D001680 ORTHO05D001596 5.2e-19 97.4 73 65.8
BolC2t08281H Brassica oleracea HOM05D001680 ORTHO05D001596 5.2e-19 97.4 73 65.8
BcaB05g24121 Brassica carinata HOM05D001680 ORTHO05D001596 1.5e-18 95.9 73 67.1
Thhalv10019107m.g Eutrema salsugineum HOM05D001680 ORTHO05D001596 2.0e-18 95.5 73 65.8
BcaB04g19544 Brassica carinata HOM05D001680 ORTHO05D001596 3.4e-18 94.7 72 69.4
BolC9t53382H Brassica oleracea HOM05D001680 ORTHO05D001596 3.4e-18 94.7 72 69.4
Aa31LG2G2510 Aethionema arabicum HOM05D001680 ORTHO05D001596 5.8e-18 94.0 73 67.1
C09p04530 Brassica napus HOM05D001680 ORTHO05D001596 7.5e-18 93.6 72 68.1
A09p04280 Brassica napus HOM05D001680 ORTHO05D001596 5.4e-16 87.4 72 65.3
BraA09t36065Z Brassica rapa HOM05D001680 ORTHO05D001596 5.4e-16 87.4 72 65.3
THA.LOC104819142 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 5.4e-16 87.4 73 60.3
THA.LOC104824565 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 3.5e-15 84.7 73 57.5
THA.LOC104823834 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 1.0e-14 83.2 71 59.2
THA.LOC104805984 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 5.0e-14 80.9 73 56.2
Lj1P934T39 Lonicera japonica HOM05D001680 ORTHO05D001596 3.6e-12 74.7 72 55.6
CSS0017065 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 4.7e-12 74.3 68 58.8
CSS0042263 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 4.7e-12 74.3 68 58.8
QL08p059070 Quercus lobata HOM05D001680 ORTHO05D001596 6.2e-12 73.9 68 57.4
THA.LOC104805679 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 8.1e-12 73.6 71 59.2
THA.LOC104824564 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 8.1e-12 73.6 88 48.9
Ciclev10032608m.g Citrus clementina HOM05D001680 ORTHO05D001596 2.3e-11 72.0 68 54.4
Nitab4.5_0005167g0050 Nicotiana tabacum HOM05D001680 ORTHO05D001596 2.3e-11 72.0 72 50.0
CSS0036488 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 3.1e-11 71.6 73 50.7
Hma1.2p1_0067F.1_g037080 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 4.0e-11 71.2 68 51.5
Nitab4.5_0012494g0010 Nicotiana tabacum HOM05D001680 ORTHO05D001596 5.2e-11 70.9 72 50.0
CAN.G170.6 Capsicum annuum HOM05D001680 ORTHO05D001596 6.8e-11 70.5 72 48.6
Cpa.g.sc1.378 Carica papaya HOM05D001680 ORTHO05D001596 6.8e-11 70.5 68 54.4
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 6.8e-11 70.5 69 53.6
Prupe.2G231700 Prunus persica HOM05D001680 ORTHO05D001596 6.8e-11 70.5 69 52.2
Dinv31436 Davidia involucrata HOM05D001680 ORTHO05D001596 8.9e-11 70.1 68 54.4
Lj8A86G40 Lonicera japonica HOM05D001680 ORTHO05D001596 8.9e-11 70.1 73 50.7
Ciclev10016496m.g Citrus clementina HOM05D001680 ORTHO05D001596 1.2e-10 69.7 68 52.9
Cc02_g08140 Coffea canephora HOM05D001680 ORTHO05D001596 1.2e-10 69.7 67 50.7
MD07G1194300 Malus domestica HOM05D001680 ORTHO05D001596 1.5e-10 69.3 73 49.3
Aqoxy7G01670 Aquilegia oxysepala HOM05D001680 ORTHO05D001596 2.0e-10 68.9 69 50.7
Lalb_Chr18g0059791 Lupinus albus HOM05D001680 ORTHO05D001596 2.0e-10 68.9 71 49.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 2.6e-10 68.6 69 52.2
TAR486G0005 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.6e-10 68.6 69 55.1
Dinv44657 Davidia involucrata HOM05D001680 ORTHO05D001596 3.4e-10 68.2 72 47.2
Actinidia04463 Actinidia chinensis HOM05D001680 ORTHO05D001596 5.8e-10 67.4 72 47.2
CiPaw.15G086700 Carya illinoinensis HOM05D001680 ORTHO05D001596 5.8e-10 67.4 69 52.2
MD01G1124100 Malus domestica HOM05D001680 ORTHO05D001596 5.8e-10 67.4 73 49.3
Sopen01g037290 Solanum pennellii HOM05D001680 ORTHO05D001596 7.5e-10 67.0 72 44.4
Glyma.13G243400 Glycine max HOM05D001680 ORTHO05D001596 9.9e-10 66.6 72 50.0
Actinidia29215 Actinidia chinensis HOM05D001680 ORTHO05D001596 1.3e-09 66.2 66 53.0
MD01G1124200 Malus domestica HOM05D001680 ORTHO05D001596 1.3e-09 66.2 73 49.3
Oeu021557.1 Olea europaea HOM05D001680 ORTHO05D001596 1.3e-09 66.2 71 43.7
Solyc01g091520.3 Solanum lycopersicum HOM05D001680 ORTHO05D001596 1.3e-09 66.2 72 44.4
ECA238G3773 Erigeron canadensis HOM05D001680 ORTHO05D001596 1.7e-09 65.9 66 51.5
Lsat_1_v5_gn_2_117781 Lactuca sativa HOM05D001680 ORTHO05D001596 1.7e-09 65.9 65 53.8
Lj1g0006371 Lotus japonicus HOM05D001680 ORTHO05D001596 1.7e-09 65.9 68 44.1
Atru.chr12.501 Acer truncatum HOM05D001680 ORTHO05D001596 2.2e-09 65.5 68 50.0
ECA238G3779 Erigeron canadensis HOM05D001680 ORTHO05D001596 2.2e-09 65.5 71 50.7
Nn1g04492 Nelumbo nucifera HOM05D001680 ORTHO05D001596 2.2e-09 65.5 66 51.5
SalBow5G3329 Salvia bowleyana HOM05D001680 ORTHO05D001596 2.2e-09 65.5 64 51.6
TAR486G0003 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.2e-09 65.5 69 53.6
Dinv44660 Davidia involucrata HOM05D001680 ORTHO05D001596 2.9e-09 65.1 72 45.8
Oeu037888.1 Olea europaea HOM05D001680 ORTHO05D001596 2.9e-09 65.1 73 43.8
TAR624G0040 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.9e-09 65.1 69 52.2
MSTRG.3595 Avicennia marina HOM05D001680 ORTHO05D001596 3.7e-09 64.7 66 47.0
PGSC0003DMG400012768 Solanum tuberosum HOM05D001680 ORTHO05D001596 3.7e-09 64.7 72 43.1
HanXRQChr14g0458271 Helianthus annuus HOM05D001680 ORTHO05D001596 4.9e-09 64.3 66 51.5
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.9e-09 64.3 73 43.8
HanXRQChr03g0092231 Helianthus annuus HOM05D001680 ORTHO05D001596 6.4e-09 63.9 71 47.9
RcHm_v2.0_Chr1g0366311 Rosa chinensis HOM05D001680 ORTHO05D001596 6.4e-09 63.9 68 50.0
SalBow5G5442 Salvia bowleyana HOM05D001680 ORTHO05D001596 6.4e-09 63.9 64 50.0
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea HOM05D001446 ORTHO05D001360 8.3e-09 63.5 66 45.5
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea HOM05D001446 ORTHO05D001360 8.3e-09 63.5 66 45.5
CiPaw.02G182600 Carya illinoinensis HOM05D001680 ORTHO05D001596 8.3e-09 63.5 69 52.2
Eucgr.J00043 Eucalyptus grandis HOM05D001680 ORTHO05D001596 8.3e-09 63.5 66 48.5
CiPaw.15G086600 Carya illinoinensis HOM05D001680 ORTHO05D001596 1.1e-08 63.2 68 50.0
Peaxi162Scf00069g00153 Petunia axillaris HOM05D001680 ORTHO05D001596 1.1e-08 63.2 67 46.3
SalBow5G2367 Salvia bowleyana HOM05D001680 ORTHO05D001596 1.1e-08 63.2 64 48.4
Atru.chr12.502 Acer truncatum HOM05D001680 ORTHO05D001596 1.4e-08 62.8 68 48.5
Dinv25992 Davidia involucrata HOM05D001680 ORTHO05D001596 1.4e-08 62.8 68 47.1
MBI06_g15769_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 1.4e-08 62.8 71 49.3
Sc09g0007020 Simmondsia chinensis HOM05D001680 ORTHO05D001596 1.4e-08 62.8 74 43.2
FAN10G1833 Fragaria x ananassa HOM05D001680 ORTHO05D001596 1.9e-08 62.4 66 51.5
Lj3A796T22 Lonicera japonica HOM05D001680 ORTHO05D001596 1.9e-08 62.4 72 44.4
RcHm_v2.0_Chr1g0366321 Rosa chinensis HOM05D001680 ORTHO05D001596 1.9e-08 62.4 68 48.5
DCAR_027659 Daucus carota HOM05D001680 ORTHO05D001596 2.4e-08 62.0 71 45.1
Migut.L00377 Erythranthe guttata HOM05D001680 ORTHO05D001596 2.4e-08 62.0 66 48.5
Eucgr.J00044 Eucalyptus grandis HOM05D001680 ORTHO05D001596 3.2e-08 61.6 66 47.0
Lalb_Chr17g0336201 Lupinus albus HOM05D001680 ORTHO05D001596 3.2e-08 61.6 68 44.1
Sc06g0007420 Simmondsia chinensis HOM05D001680 ORTHO05D001596 3.2e-08 61.6 68 44.1
TPR.G15482 Trifolium pratense HOM05D001680 ORTHO05D001596 3.2e-08 61.6 66 48.5
Glyma.18G288900 Glycine max HOM05D001680 ORTHO05D001596 4.1e-08 61.2 68 45.6
Nn1g04489 Nelumbo nucifera HOM05D001680 ORTHO05D001596 4.1e-08 61.2 56 57.1
Potri.010G207800 Populus trichocarpa HOM05D001680 ORTHO05D001596 4.1e-08 61.2 68 42.6
Thecc.10G047000 Theobroma cacao HOM05D001680 ORTHO05D001596 4.1e-08 61.2 68 44.1
TPR.G29043 Trifolium pratense HOM05D001680 ORTHO05D001596 4.1e-08 61.2 72 44.4
GSVIVG01016583001 Vitis vinifera HOM05D001680 ORTHO05D001596 4.1e-08 61.2 69 44.9
Duzib114G0501 Durio zibethinus HOM05D001680 ORTHO05D001596 5.4e-08 60.8 68 48.5
Manes.10G032900 Manihot esculenta HOM05D001680 ORTHO05D001596 5.4e-08 60.8 68 44.1
Ca_00330_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 7.1e-08 60.5 72 43.1
MD13G1210400 Malus domestica HOM05D001680 ORTHO05D001596 7.1e-08 60.5 72 45.8
Peaxi162Scf00069g01510 Petunia axillaris HOM05D001680 ORTHO05D001596 7.1e-08 60.5 63 46.0
Psat1g205400 Pisum sativum HOM05D001680 ORTHO05D001596 7.1e-08 60.5 72 43.1
Rhsim02G0035300 Rhododendron simsii HOM05D001680 ORTHO05D001596 7.1e-08 60.5 72 41.7
Sopen05g006510 Solanum pennellii HOM05D001680 ORTHO05D001596 7.1e-08 60.5 66 47.0
CAN.G869.25 Capsicum annuum HOM05D001680 ORTHO05D001596 9.2e-08 60.1 66 48.5
Hma1.2p1_0310F.1_g120700 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 9.2e-08 60.1 72 40.3
Lsat_1_v5_gn_5_72480 Lactuca sativa HOM05D001680 ORTHO05D001596 9.2e-08 60.1 72 40.3
Psat1g205360 Pisum sativum HOM05D001680 ORTHO05D001596 9.2e-08 60.1 72 41.7
Medtr7g024300 Medicago truncatula HOM05D001680 ORTHO05D001596 1.2e-07 59.7 68 42.6
CANSAT01G1859 Cannabis sativa HOM05D001680 ORTHO05D001596 1.6e-07 59.3 69 46.4
ECA240G2121 Erigeron canadensis HOM05D001680 ORTHO05D001596 1.6e-07 59.3 72 40.3
FvH4_7g21971 Fragaria vesca HOM05D001680 ORTHO05D001596 1.6e-07 59.3 65 50.8
Gohir.D05G300900 Gossypium hirsutum HOM05D001680 ORTHO05D001596 1.6e-07 59.3 68 45.6
Gorai.009G318900 Gossypium raimondii HOM05D001680 ORTHO05D001596 1.6e-07 59.3 68 45.6
PGR044G2295 Punica granatum HOM05D001680 ORTHO05D001596 1.6e-07 59.3 66 45.5
ClCG09G020040 Citrullus lanatus HOM05D001680 ORTHO05D001596 2.1e-07 58.9 64 46.9
Cc02_g08150 Coffea canephora HOM05D001680 ORTHO05D001596 2.1e-07 58.9 68 44.1
Lalb_Chr03g0037121 Lupinus albus HOM05D001680 ORTHO05D001596 2.1e-07 58.9 72 44.4
Phvul.006G189000 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 2.1e-07 58.9 72 44.4
PGR044G0149 Punica granatum HOM05D001680 ORTHO05D001596 2.1e-07 58.9 66 48.5
arahy.Tifrunner.gnm1.ann1.26JD8R Arachis hypogaea HOM05D001680 ORTHO05D001596 2.7e-07 58.5 72 44.4
CANSAT56G2235 Cannabis sativa HOM05D001680 ORTHO05D001596 2.7e-07 58.5 72 43.1
Ca_11963_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 2.7e-07 58.5 72 44.4
DCAR_015195 Daucus carota HOM05D001680 ORTHO05D001596 2.7e-07 58.5 67 41.8
Psat3g180720 Pisum sativum HOM05D001680 ORTHO05D001596 2.7e-07 58.5 68 44.1
TWI38G0919 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 2.7e-07 58.5 68 41.2
VMungo0540G1900 Vigna mungo HOM05D001680 ORTHO05D001596 2.7e-07 58.5 72 43.1
VMungo1383G2118 Vigna mungo HOM05D001680 ORTHO05D001596 2.7e-07 58.5 66 40.9
arahy.Tifrunner.gnm1.ann1.MF24RD Arachis hypogaea HOM05D001680 ORTHO05D001596 3.5e-07 58.2 72 43.1
ECA233G1268 Erigeron canadensis HOM05D001680 ORTHO05D001596 3.5e-07 58.2 71 36.6
Lsat_1_v5_gn_3_122260 Lactuca sativa HOM05D001680 ORTHO05D001596 3.5e-07 58.2 71 40.8
Nn5g29763 Nelumbo nucifera HOM05D001680 ORTHO05D001596 3.5e-07 58.2 56 55.4
Phvul.007G272300 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 3.5e-07 58.2 72 45.8
CANSAT01G0532 Cannabis sativa HOM05D001680 ORTHO05D001596 4.6e-07 57.8 69 44.9
MELO3C025448.2 Cucumis melo HOM05D001680 ORTHO05D001596 6.0e-07 57.4 64 43.8
DCAR_015194 Daucus carota HOM05D001680 ORTHO05D001596 6.0e-07 57.4 67 41.8
FAN01G2736 Fragaria x ananassa HOM05D001680 ORTHO05D001596 6.0e-07 57.4 65 49.2
PGR044G0512 Punica granatum HOM05D001680 ORTHO05D001596 6.0e-07 57.4 66 43.9
Rhsim09G0164400 Rhododendron simsii HOM05D001680 ORTHO05D001596 6.0e-07 57.4 69 44.9
Cfa008349 Carpinus fangiana HOM05D001680 ORTHO05D001596 7.8e-07 57.0 72 40.3
Ca_07245_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 7.8e-07 57.0 66 42.4
Migut.N00249 Erythranthe guttata HOM05D001680 ORTHO05D001596 7.8e-07 57.0 73 41.1
Glyma.10G007900 Glycine max HOM05D001680 ORTHO05D001596 7.8e-07 57.0 61 49.2
Lj6g0011787 Lotus japonicus HOM05D001680 ORTHO05D001596 7.8e-07 57.0 72 44.4
Prupe.1G034900 Prunus persica HOM05D001680 ORTHO05D001596 7.8e-07 57.0 72 41.7
Sabra10G0160400 Salix brachista HOM05D001680 ORTHO05D001596 7.8e-07 57.0 68 38.2
MELO3C006442.2 Cucumis melo HOM05D001680 ORTHO05D001596 1.0e-06 56.6 73 39.7
MBI06_g15768_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 1.0e-06 56.6 69 44.9
MBI06_g29966_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 1.0e-06 56.6 69 44.9
Medtr2g013460 Medicago truncatula HOM05D001680 ORTHO05D001596 1.0e-06 56.6 72 41.7
Oeu058881.1 Olea europaea HOM05D001680 ORTHO05D001596 1.0e-06 56.6 72 43.1
Phvul.008G013200 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 1.0e-06 56.6 68 38.2
Rhsim09G0164500 Rhododendron simsii HOM05D001680 ORTHO05D001596 1.0e-06 56.6 69 42.0
Solyc05g010720.4 Solanum lycopersicum HOM05D001680 ORTHO05D001596 1.0e-06 56.6 66 42.4
PGSC0003DMG400016285 Solanum tuberosum HOM05D001680 ORTHO05D001596 1.0e-06 56.6 73 41.1
COL.COLO4_14965 Corchorus olitorius HOM05D001680 ORTHO05D001596 1.3e-06 56.2 68 42.6
Haze_11336 Corylus avellana HOM05D001680 ORTHO05D001596 1.3e-06 56.2 72 38.9
Lj6g0014672 Lotus japonicus HOM05D001680 ORTHO05D001596 1.3e-06 56.2 72 44.4
Sabra08G0037900 Salix brachista HOM05D001680 ORTHO05D001596 1.3e-06 56.2 68 44.1
CSS0039787 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 1.7e-06 55.8 73 39.7
SGA_v2.0_scaffold11G05788 Striga asiatica HOM05D001680 ORTHO05D001596 1.7e-06 55.8 72 36.1
CiPaw.02G114600 Carya illinoinensis HOM05D001680 ORTHO05D001596 2.3e-06 55.5 72 38.9
CsaV3_3G012330 Cucumis sativus L. HOM05D001680 ORTHO05D001596 2.3e-06 55.5 73 39.7
DCAR_027295 Daucus carota HOM05D001680 ORTHO05D001596 2.3e-06 55.5 69 42.0
ECA233G6031 Erigeron canadensis HOM05D001680 ORTHO05D001596 2.3e-06 55.5 71 35.2
Gohir.A05G301200 Gossypium hirsutum HOM05D001680 ORTHO05D001596 2.3e-06 55.5 66 43.9
QL06p016681 Quercus lobata HOM05D001680 ORTHO05D001596 2.3e-06 55.5 73 41.1
PGSC0003DMG400016286 Solanum tuberosum HOM05D001680 ORTHO05D001596 2.3e-06 55.5 73 39.7
PGSC0003DMG400019643 Solanum tuberosum HOM05D001680 ORTHO05D001596 2.3e-06 55.5 66 40.9
Sc13g0005160 Simmondsia chinensis HOM05D001680 ORTHO05D001596 3.0e-06 55.1 71 38.0
Lalb_Chr03g0037141 Lupinus albus HOM05D001680 ORTHO05D001596 3.9e-06 54.7 72 38.9
Psat3g180640 Pisum sativum HOM05D001680 ORTHO05D001596 3.9e-06 54.7 66 40.9
PSO170G4179 Papaver somniferum HOM05D001680 ORTHO05D001596 5.1e-06 54.3 56 50.0
MELO3C006443.2 Cucumis melo HOM05D001680 ORTHO05D001596 6.6e-06 53.9 72 38.9
TWI09G0873 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 6.6e-06 53.9 73 37.0
TWI73G0979 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 6.6e-06 53.9 72 38.9
CSS0016983 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 8.6e-06 53.5 72 41.7
AUR62040960 Chenopodium quinoa HOM05D001680 ORTHO05D001596 8.6e-06 53.5 75 44.0
Cc03_g05150 Coffea canephora HOM05D001680 ORTHO05D001596 8.6e-06 53.5 72 37.5
Manes.07G113600 Manihot esculenta HOM05D001680 ORTHO05D001596 8.6e-06 53.5 78 38.5


User provided reference genes

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