Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2309.3 1184 100.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1993.0 1185 86.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1977.2 1189 85.2
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1969.9 1189 85.4
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1958.0 1189 84.9
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1953.7 1185 85.6
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1952.9 1188 85.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1918.3 1186 84.6
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1917.9 1186 84.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1899.8 1185 83.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1899.4 1188 82.5
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1895.2 1185 83.5
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1858.6 1185 82.2
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1744.2 1191 75.5
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1591.2 1208 68.6
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1208 68.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1586.2 1209 68.1
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1585.1 1200 68.8
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1197 69.2
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1207 67.8
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1572.4 1211 68.3
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1568.1 1208 68.0
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1567.0 1200 68.2
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1566.2 1210 67.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1563.1 1217 67.3
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1209 66.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1561.6 1232 66.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1561.6 1214 67.3
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1560.8 1214 67.3
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1559.7 1205 68.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1554.3 1200 67.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1197 66.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1531.2 1206 66.7
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1526.1 1206 66.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1519.2 1207 65.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1519.2 1213 66.0
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1213 65.2
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1216 65.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1515.4 1212 65.7
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1512.3 1207 65.9
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1511.5 1216 64.9
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1509.2 1206 65.5
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1508.8 1212 65.4
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1508.0 1215 65.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1507.7 1203 64.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1501.9 1209 65.1
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1501.9 1209 64.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1501.9 1215 65.1
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1501.5 1213 64.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1500.7 1185 66.3
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1498.4 1207 65.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1498.4 1211 64.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1498.0 1207 65.1
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1492.2 1213 64.7
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1491.5 1283 62.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1491.1 1208 64.2
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1488.0 1208 63.7
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1484.9 1219 65.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1481.5 1208 63.7
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1473.8 1209 64.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1470.7 1210 63.0
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1469.5 1252 62.6
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1466.4 1207 63.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1466.4 1181 64.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1465.7 1246 62.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1463.7 1201 63.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1463.4 1207 63.7
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1461.4 1194 63.8
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1459.5 1212 62.5
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1459.1 1195 62.8
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1458.0 1204 63.4
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1446.0 1213 62.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1445.6 1203 63.3
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1444.9 1190 63.1
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1444.9 1209 62.4
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1444.9 1254 61.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1443.7 1212 63.4
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1436.8 1218 62.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1436.0 1183 65.3
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1427.5 1272 60.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1426.0 1185 64.4
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1418.7 1195 62.7
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1413.3 1266 60.5
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1398.6 1206 61.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1383.2 1210 60.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1372.5 1226 60.6
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1367.4 1155 61.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1337.8 1220 59.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1336.6 1011 68.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1304.7 1026 65.8
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1290.0 1191 57.5
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1283.9 1206 56.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1265.4 1191 57.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1246.1 1202 56.2
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1241.9 1224 55.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1159.1 1026 60.1
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1082.8 1193 48.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1080.9 891 63.1
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 1.0e-309 1067.0 1212 49.0
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 4.0e-309 1065.1 967 58.0
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.5e-303 1045.8 602 89.2
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 8.3e-291 1004.2 1190 48.9
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 3.0e-280 969.1 888 60.7
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 2.0e-276 956.4 889 58.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.4e-266 922.9 1228 45.0
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 5.4e-266 921.8 799 60.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.6e-262 910.2 607 76.1
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.2e-260 904.0 820 59.5
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 8.7e-256 887.9 486 93.4
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 7.1e-242 841.6 1161 43.9
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.8e-198 696.0 1267 36.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 4.6e-172 609.8 1113 37.0
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.9e-166 590.5 1255 33.2
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.7e-163 581.3 603 52.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.4e-149 535.0 419 66.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 2.3e-147 527.7 415 66.0
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.3e-137 495.4 653 45.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-121 441.8 330 67.3
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.3e-115 421.4 711 41.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.0e-114 418.3 1122 29.9
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.7e-113 415.2 284 73.2
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.7e-92 344.7 340 55.3
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.6e-78 297.0 266 58.6
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.6e-78 297.0 266 58.6
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.7e-73 282.3 181 80.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 5.4e-72 277.3 200 71.0
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.7e-71 275.0 181 75.7
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.4e-66 257.7 158 84.2
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.6e-60 238.0 186 65.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.5e-50 203.8 104 92.3
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 8.1e-44 183.7 164 64.0
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.2e-42 179.9 118 83.1
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 6.9e-35 154.1 181 49.7
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.4e-34 151.4 162 53.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.4e-32 145.6 167 50.3
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 6.0e-23 114.4 1185 22.0
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.5e-21 109.8 226 35.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.3e-20 106.7 64 82.8
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 5.8e-18 97.8 142 40.8
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.3e-17 96.7 122 38.5
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.1e-15 89.4 95 50.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.7e-15 89.0 120 43.3
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.9e-15 87.4 116 42.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.0e-14 87.0 116 42.2
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-13 83.2 113 40.7
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.1e-11 77.0 93 41.9
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.9e-09 68.9 43 72.1
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.9e-08 66.2 152 32.9
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.9e-08 66.2 278 27.3
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 7.1e-08 64.3 81 48.1
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.0e-06 58.9 59 57.6


User provided reference genes

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