Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G22070 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 2.0e-55 218.8 106 100.0
AL2G22050 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 3.8e-38 161.4 78 97.4
AT1G65390 Arabidopsis thaliana HOM05D000005 ORTHO05D000146 2.0e-34 149.1 78 89.7
Carub.0008s0315 Capsella rubella HOM05D000005 ORTHO05D004260 1.9e-24 115.9 76 71.1
Carub.0008s0319 Capsella rubella HOM05D000248 ORTHO05D000146 3.0e-22 108.6 76 64.5
AL8G14260 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 9.8e-18 93.6 75 54.7
AL1G48370 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 1.7e-17 92.8 74 56.8
Carub.0008s0317 Capsella rubella HOM05D000005 ORTHO05D000146 4.9e-17 91.3 74 55.4
BcaC09g51365 Brassica carinata HOM05D000248 ORTHO05D000146 1.9e-16 89.4 77 51.9
BcaNung01748 Brassica carinata HOM05D000248 ORTHO05D000146 1.9e-16 89.4 78 52.6
Sp7g18340 Schrenkiella parvula HOM05D000248 ORTHO05D000146 2.4e-16 89.0 77 53.2
CARHR033320 Cardamine hirsuta HOM05D000248 ORTHO05D000146 5.4e-16 87.8 74 54.1
BraA01t01113Z Brassica rapa HOM05D000248 ORTHO05D000146 1.2e-15 86.7 77 50.6
BcaC01g00637 Brassica carinata HOM05D000248 ORTHO05D000146 2.1e-15 85.9 77 50.6
C01p13880 Brassica napus HOM05D000248 ORTHO05D000146 2.1e-15 85.9 77 51.9
C03p82340 Brassica napus HOM05D000248 ORTHO05D000146 2.1e-15 85.9 77 50.6
BolC3t20519H Brassica oleracea HOM05D000248 ORTHO05D000146 2.1e-15 85.9 77 50.6
Thhalv10026213m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 2.1e-15 85.9 77 53.2
A01p11710 Brassica napus HOM05D000248 ORTHO05D000146 2.7e-15 85.5 77 50.6
AT1G33920 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 3.5e-15 85.1 74 54.1
BolC1t01356H Brassica oleracea HOM05D000248 ORTHO05D000146 6.0e-15 84.3 77 51.9
CARHR226610 Cardamine hirsuta HOM05D000248 ORTHO05D000146 6.0e-15 84.3 76 53.9
AL7G34240 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 7.8e-15 84.0 76 50.0
BcaB03g11644 Brassica carinata HOM05D000248 ORTHO05D000146 3.0e-14 82.0 77 48.1
AT4G19840 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 3.9e-14 81.6 76 48.7
Carub.0007s2137 Capsella rubella HOM05D000248 ORTHO05D000146 5.1e-14 81.3 75 50.7
A08p14520 Brassica napus HOM05D000248 ORTHO05D000146 1.1e-13 80.1 77 46.8
BraA08t33440Z Brassica rapa HOM05D000248 ORTHO05D000146 1.1e-13 80.1 77 46.8
CiPaw.09G078400 Carya illinoinensis HOM05D000248 ORTHO05D000146 2.5e-13 79.0 78 50.0
QL11p018028 Quercus lobata HOM05D000248 ORTHO05D000146 1.2e-12 76.6 77 48.1
GSVIVG01012084001 Vitis vinifera HOM05D000248 ORTHO05D000146 1.6e-12 76.3 74 51.4
THA.LOC104806214 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 2.1e-12 75.9 76 47.4
CiPaw.09G078500 Carya illinoinensis HOM05D000248 ORTHO05D000146 6.2e-12 74.3 78 48.7
Aa31LG9G8030 Aethionema arabicum HOM05D000248 ORTHO05D000146 8.1e-12 73.9 80 42.5
Lj4g0006685 Lotus japonicus HOM05D000248 ORTHO05D000146 8.1e-12 73.9 76 44.7
Glyma.20G021000 Glycine max HOM05D000248 ORTHO05D000146 1.4e-11 73.2 76 44.7
Sc24g0000100 Simmondsia chinensis HOM05D000248 ORTHO05D000146 1.4e-11 73.2 79 44.3
TWI38G2162 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 1.4e-11 73.2 76 48.7
arahy.Tifrunner.gnm1.ann1.ZZ7G8M Arachis hypogaea HOM05D000248 ORTHO05D000146 2.3e-11 72.4 76 44.7
Prupe.4G110500 Prunus persica HOM05D000248 ORTHO05D000146 2.3e-11 72.4 76 44.7
THA.LOC104811514 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 3.1e-11 72.0 76 46.1
VMungo0251G0674 Vigna mungo HOM05D000248 ORTHO05D000146 3.1e-11 72.0 76 42.1
EL10Ac8g20003 Beta vulgaris HOM05D000248 ORTHO05D000146 4.0e-11 71.6 78 46.2
Ca_18768_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 4.0e-11 71.6 76 46.1
Glyma.07G222500 Glycine max HOM05D000248 ORTHO05D000146 4.0e-11 71.6 76 42.1
Ciclev10016359m.g Citrus clementina HOM05D000248 ORTHO05D000146 5.2e-11 71.2 76 48.7
Thecc.06G141400 Theobroma cacao HOM05D000248 ORTHO05D000146 6.8e-11 70.9 76 46.1
Ca_07525_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 8.9e-11 70.5 76 44.7
Ca_30589_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 8.9e-11 70.5 76 44.7
Oeu050057.1 Olea europaea HOM05D000248 ORTHO05D000146 8.9e-11 70.5 77 46.8
Phvul.002G098900 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 8.9e-11 70.5 76 39.5
Sp7g18350 Schrenkiella parvula HOM05D000248 ORTHO05D000146 8.9e-11 70.5 77 48.1
TPR.G20975 Trifolium pratense HOM05D000248 ORTHO05D000146 8.9e-11 70.5 76 43.4
CiPaw.09G078600 Carya illinoinensis HOM05D000248 ORTHO05D000146 1.2e-10 70.1 78 44.9
Glyma.20G021500 Glycine max HOM05D000248 ORTHO05D000146 1.2e-10 70.1 76 42.1
Medtr4g083970 Medicago truncatula HOM05D000248 ORTHO05D000146 1.2e-10 70.1 76 40.8
Glyma.20G020900 Glycine max HOM05D000248 ORTHO05D000146 1.5e-10 69.7 76 42.1
Potri.012G120400 Populus trichocarpa HOM05D000248 ORTHO05D000146 1.5e-10 69.7 74 45.9
SGA_v2.0_scaffold298G47681 Striga asiatica HOM05D000248 ORTHO05D000146 1.5e-10 69.7 76 43.4
TAR627G0212 Trochodendron aralioides HOM05D000248 ORTHO05D000146 1.5e-10 69.7 76 44.7
Migut.M01974 Erythranthe guttata HOM05D000248 ORTHO05D000146 2.0e-10 69.3 76 42.1
arahy.Tifrunner.gnm1.ann1.6F5IGY Arachis hypogaea HOM05D000248 ORTHO05D000146 2.6e-10 68.9 76 43.4
Psat7g137440 Pisum sativum HOM05D000248 ORTHO05D000146 2.6e-10 68.9 76 36.8
Ah.14g088120 Amaranthus hybridus HOM05D000248 ORTHO05D000146 4.4e-10 68.2 76 42.1
A01p11720 Brassica napus HOM05D000248 ORTHO05D000146 4.4e-10 68.2 77 48.1
BraA01t01114Z Brassica rapa HOM05D000248 ORTHO05D000146 4.4e-10 68.2 77 48.1
Cfa017672 Carpinus fangiana HOM05D000248 ORTHO05D000146 4.4e-10 68.2 77 42.9
Haze_23999 Corylus avellana HOM05D000248 ORTHO05D000146 4.4e-10 68.2 77 42.9
RcHm_v2.0_Chr5g0019941 Rosa chinensis HOM05D000248 ORTHO05D000146 4.4e-10 68.2 93 39.8
Duzib235G1290 Durio zibethinus HOM05D000248 ORTHO05D000146 5.8e-10 67.8 76 43.4
FAN16G2898 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.8e-10 67.8 93 39.8
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 7.6e-10 67.4 93 39.8
Hund23500 Selenicereus undatus HOM05D000248 ORTHO05D000146 7.6e-10 67.4 78 43.6
vmacro03512 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 7.6e-10 67.4 77 45.5
MSTRG.16340 Avicennia marina HOM05D000248 ORTHO05D000146 9.9e-10 67.0 76 42.1
Ah.09g235220 Amaranthus hybridus HOM05D000248 ORTHO05D000146 1.7e-09 66.2 73 45.2
Haze_23996 Corylus avellana HOM05D000248 ORTHO05D000146 1.7e-09 66.2 77 39.0
FvH4_3g12180 Fragaria vesca HOM05D000248 ORTHO05D000146 1.7e-09 66.2 93 39.8
FAN21G1612 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.7e-09 66.2 93 39.8
Peaxi162Scf00149g00813 Petunia axillaris HOM05D000248 ORTHO05D000146 1.7e-09 66.2 76 42.1
Manes.03G070740 Manihot esculenta HOM05D000248 ORTHO05D000146 2.2e-09 65.9 76 46.1
Thecc.06G009100 Theobroma cacao HOM05D000125 ORTHO05D009513 2.2e-09 65.9 76 44.7
COL.COLO4_30983 Corchorus olitorius HOM05D000248 ORTHO05D000146 2.9e-09 65.5 76 42.1
MD05G1254200 Malus domestica HOM05D000248 ORTHO05D000146 3.8e-09 65.1 93 37.6
Nitab4.5_0003773g0020 Nicotiana tabacum HOM05D000248 ORTHO05D000146 3.8e-09 65.1 78 46.2
Atru.chr10.491 Acer truncatum HOM05D000248 ORTHO05D000146 4.9e-09 64.7 69 46.4
Prupe.4G107700 Prunus persica HOM05D000248 ORTHO05D000146 4.9e-09 64.7 76 40.8
HPP92_014205 Vanilla planifolia HOM05D000248 ORTHO05D000146 4.9e-09 64.7 79 41.8
HPP92_026464 Vanilla planifolia HOM05D000248 ORTHO05D000146 4.9e-09 64.7 79 41.8
AL8G13710 Arabidopsis lyrata HOM05D000005 ORTHO05D031400 6.4e-09 64.3 77 45.5
ECA246G2098 Erigeron canadensis HOM05D000248 ORTHO05D000146 6.4e-09 64.3 93 38.7
Sc17g0007160 Simmondsia chinensis HOM05D000248 ORTHO05D000146 6.4e-09 64.3 86 40.7
Aa31LG6G2320 Aethionema arabicum HOM05D000248 ORTHO05D000146 8.4e-09 63.9 77 50.6
Glyma.20G021200 Glycine max HOM05D000248 ORTHO05D000146 8.4e-09 63.9 76 42.1
Carub.0007s2136 Capsella rubella HOM05D000248 ORTHO05D000146 1.1e-08 63.5 74 45.9
Haze_06029 Corylus avellana HOM05D000248 ORTHO05D000146 1.1e-08 63.5 76 43.4
Lalb_Chr16g0385281 Lupinus albus HOM05D000248 ORTHO05D000146 1.1e-08 63.5 77 42.9
HanXRQChr12g0378211 Helianthus annuus HOM05D000248 ORTHO05D000146 1.4e-08 63.2 76 39.5
Prupe.4G107600 Prunus persica HOM05D000248 ORTHO05D000146 1.4e-08 63.2 76 40.8
AL7G34230 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 1.9e-08 62.8 74 45.9
DCAR_004324 Daucus carota HOM05D000248 ORTHO05D000146 1.9e-08 62.8 76 39.5
Psat7g130840 Pisum sativum HOM05D000248 ORTHO05D000146 1.9e-08 62.8 76 34.2
Nitab4.5_0002056g0070 Nicotiana tabacum HOM05D000248 ORTHO05D000146 2.4e-08 62.4 78 43.6
Os01g0158400 Oryza sativa ssp. japonica HOM05D000248 ORTHO05D000146 2.4e-08 62.4 74 39.2
Sopen02g018100 Solanum pennellii HOM05D000248 ORTHO05D000146 2.4e-08 62.4 78 44.9
PGSC0003DMG402010355 Solanum tuberosum HOM05D000248 ORTHO05D000146 2.4e-08 62.4 78 44.9
BcaC09g51364 Brassica carinata HOM05D000248 ORTHO05D000146 3.2e-08 62.0 77 46.8
C01p13900 Brassica napus HOM05D000248 ORTHO05D000146 3.2e-08 62.0 75 45.3
Cfa000721 Carpinus fangiana HOM05D000248 ORTHO05D000146 3.2e-08 62.0 74 43.2
CSS0043860 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 4.1e-08 61.6 76 39.5
Lj2A352T45 Lonicera japonica HOM05D000248 ORTHO05D000146 4.1e-08 61.6 77 39.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.4e-08 61.2 73 42.5
Thecc.06G010500 Theobroma cacao HOM05D000125 ORTHO05D000146 5.4e-08 61.2 76 38.2
Thecc.06G010700 Theobroma cacao HOM05D000125 ORTHO05D009513 5.4e-08 61.2 74 45.9
Lj1C1144T7 Lonicera japonica HOM05D000248 ORTHO05D000146 7.1e-08 60.8 76 40.8
MBI01_g44880_MAGBIO Magnolia biondii HOM05D000248 ORTHO05D000146 9.2e-08 60.5 76 42.1
Thhalv10001196m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 1.6e-07 59.7 54 50.0
ECA247G0179 Erigeron canadensis HOM05D000248 ORTHO05D000146 2.1e-07 59.3 76 43.4
Psat7g130600 Pisum sativum HOM05D000248 ORTHO05D000146 2.1e-07 59.3 76 34.2
CARHR177030 Cardamine hirsuta HOM05D000005 ORTHO05D010626 2.7e-07 58.9 78 39.7
Solyc02g069020.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 2.7e-07 58.9 78 43.6
CAN.G519.7 Capsicum annuum HOM05D000248 ORTHO05D000146 3.5e-07 58.5 78 43.6
ECA234G4187 Erigeron canadensis HOM05D000248 ORTHO05D000146 3.5e-07 58.5 75 40.0
Thecc.06G009900 Theobroma cacao HOM05D000125 ORTHO05D000146 3.5e-07 58.5 74 41.9
Hma1.2p1_0040F.1_g025210 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 4.6e-07 58.2 76 39.5
CARHR177550 Cardamine hirsuta HOM05D000248 ORTHO05D004260 7.8e-07 57.4 78 41.0
AUR62021995 Chenopodium quinoa HOM05D000248 ORTHO05D000146 7.8e-07 57.4 69 40.6
PSO170G6818 Papaver somniferum HOM05D000248 ORTHO05D000146 1.0e-06 57.0 80 38.8
PSO675G0473 Papaver somniferum HOM05D000248 ORTHO05D000146 1.0e-06 57.0 80 38.8
Sed0026007 Sechium edule HOM05D000248 ORTHO05D000146 1.0e-06 57.0 77 35.1
Cc09_g06220 Coffea canephora HOM05D000248 ORTHO05D000146 1.3e-06 56.6 93 37.6
Gohir.A06G195800 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.3e-06 56.6 81 39.5
CARHR177610 Cardamine hirsuta HOM05D000005 ORTHO05D004260 1.7e-06 56.2 77 37.7
Eucgr.J02622 Eucalyptus grandis HOM05D000248 ORTHO05D000146 1.7e-06 56.2 75 38.7
Lsat_1_v5_gn_2_46521 Lactuca sativa HOM05D000041 ORTHO05D000452 1.7e-06 56.2 91 37.4
PSO541G4482 Papaver somniferum HOM05D000248 ORTHO05D000146 1.7e-06 56.2 80 38.8
Aqoxy4G00216 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 2.3e-06 55.8 97 34.0
Gorai.010G237200 Gossypium raimondii HOM05D000248 ORTHO05D000146 2.3e-06 55.8 81 39.5
Lj2A352T44 Lonicera japonica HOM05D000248 ORTHO05D000146 2.3e-06 55.8 76 42.1
Carub.0008s0323 Capsella rubella HOM05D000005 ORTHO05D004260 3.0e-06 55.5 77 39.0
Thecc.06G009300 Theobroma cacao HOM05D000125 ORTHO05D009513 3.0e-06 55.5 76 40.8
Gohir.D06G203300 Gossypium hirsutum HOM05D000248 ORTHO05D000146 3.9e-06 55.1 81 39.5
Eucgr.E01892 Eucalyptus grandis HOM05D000248 ORTHO05D000146 5.1e-06 54.7 63 41.3
Prupe.8G029800 Prunus persica HOM05D000248 ORTHO05D000146 5.1e-06 54.7 77 40.3
Ah.02g118740 Amaranthus hybridus HOM05D000248 ORTHO05D000146 6.6e-06 54.3 49 42.9
CARHR177600 Cardamine hirsuta HOM05D000248 ORTHO05D000146 6.6e-06 54.3 78 39.7
QL11p010488 Quercus lobata HOM05D000248 ORTHO05D000146 8.6e-06 53.9 79 39.2
Sed0027219 Sechium edule HOM05D000248 ORTHO05D000146 8.6e-06 53.9 79 35.4


User provided reference genes

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