Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 1.2e-32 142.5 67 100.0
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 5.8e-32 140.2 67 98.5
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 1.3e-31 139.0 67 97.0
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 1.3e-31 139.0 67 97.0
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 2.9e-31 137.9 67 97.0
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 3.8e-31 137.5 67 95.5
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 8.4e-31 136.3 67 97.0
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 8.4e-31 136.3 67 95.5
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 1.9e-30 135.2 65 96.9
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 1.2e-29 132.5 67 89.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 2.7e-29 131.3 67 88.1
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 6.0e-29 130.2 62 98.4
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.0e-29 130.2 67 89.6
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.0e-29 130.2 67 89.6
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 89.6
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 86.6
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 89.6
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 88.1
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 88.1
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 88.1
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 88.1
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 85.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 85.1
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 1.1e-27 125.9 67 86.6
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 85.1
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 85.1
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 85.1
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 80.6
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 85.1
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 5.6e-27 123.6 67 80.6
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 2.1e-26 121.7 69 82.6
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 2.8e-26 121.3 67 83.6
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 8.1e-26 119.8 67 79.1
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 3.1e-25 117.9 62 85.5
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 4.0e-25 117.5 67 82.1
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 5.3e-25 117.1 62 80.6
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 5.3e-25 117.1 62 80.6
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 9.9e-24 112.8 68 77.9
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 9.9e-24 112.8 68 77.9
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 2.2e-23 111.7 56 91.1
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 3.8e-23 110.9 67 76.1
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 74.6
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 74.6
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 74.6
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 1.4e-22 109.0 67 73.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 3.2e-22 107.8 61 75.4
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.2e-21 105.9 62 72.6
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-21 105.1 67 76.1
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.1e-21 105.1 67 76.1
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 4.6e-21 104.0 67 77.6
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-20 102.1 66 69.7
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 3.0e-20 101.3 67 71.6
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 3.3e-19 97.8 59 72.9
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-18 95.1 67 68.7
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.1e-17 92.8 67 67.2
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 1.1e-17 92.8 47 87.2
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.4e-17 91.7 67 70.1
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.5e-16 87.4 67 67.2
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 4.5e-16 87.4 51 76.5
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.2e-15 85.1 67 67.2
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.2e-14 81.3 67 62.7
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 3.2e-14 81.3 50 70.0
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 9.3e-14 79.7 51 74.5
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 2.1e-13 78.6 53 67.9
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 5.1e-12 73.9 37 97.3
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 6.7e-12 73.6 68 58.8
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 4.8e-10 67.4 66 56.1
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 1.1e-09 66.2 38 81.6
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 9.0e-09 63.2 65 50.8
BolSC46t61027H Brassica oleracea HOM05D007549 ORTHO05D009532 2.5e-06 55.1 27 96.3


User provided reference genes

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