Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.8e-93 345.1 159 100.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 3.1e-92 341.7 159 98.7
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-91 338.2 159 98.1
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 97.5
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 95.6
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 9.4e-89 330.1 154 98.7
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.2
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.2
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.7e-85 318.2 159 91.2
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 90.6
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.4e-84 316.2 159 90.6
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.4e-84 315.5 159 89.3
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 3.1e-84 315.1 159 89.9
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.1e-84 314.7 159 89.3
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 7.0e-84 313.9 159 89.3
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-84 313.5 159 89.9
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-84 313.5 159 89.9
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.2e-83 313.2 159 88.1
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 89.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 88.7
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 88.1
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 2.6e-83 312.0 159 88.1
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 3.5e-83 311.6 159 88.1
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 3.5e-83 311.6 159 88.1
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 5.9e-83 310.8 159 88.7
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.0e-82 310.1 158 89.2
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.0e-82 310.1 159 86.2
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.3e-82 309.7 159 88.1
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.3e-82 309.7 160 88.1
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.9e-82 308.5 159 86.8
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.9e-82 308.5 159 88.1
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 5.0e-82 307.8 159 85.5
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-81 306.6 159 87.4
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-81 306.2 159 87.4
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.5e-81 305.4 157 87.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.5e-81 305.4 157 87.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.5e-81 305.4 157 87.9
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.2e-80 303.1 159 89.9
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.2e-80 303.1 159 86.2
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.7e-80 302.0 159 85.5
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 6.1e-80 300.8 159 84.9
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 6.7e-79 297.4 149 93.3
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 8.8e-79 297.0 159 84.3
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-78 296.6 151 88.7
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 1.5e-78 296.2 157 87.3
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.5e-78 296.2 159 84.9
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.0e-78 295.8 158 84.2
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.6e-78 295.4 159 83.6
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 2.8e-77 292.0 158 82.9
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 3.1e-76 288.5 159 84.3
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 4.5e-75 284.6 142 91.5
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-74 282.3 159 84.9
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.2e-74 282.3 143 90.9
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 2.9e-74 282.0 144 88.2
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 2.9e-74 282.0 144 88.2
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 2.9e-74 282.0 144 88.2
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.5e-74 280.8 144 87.5
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.5e-73 279.6 159 83.6
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-71 273.1 163 81.0
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 3.0e-71 271.9 159 78.0
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 5.2e-71 271.2 139 88.5
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.4e-70 268.1 139 87.1
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.3e-69 266.5 159 77.4
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.8e-69 264.6 159 79.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.9e-66 255.4 144 82.6
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 5.0e-66 254.6 134 87.3
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.8e-63 246.1 134 84.3
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.8e-60 236.1 151 75.5
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 4.1e-60 235.0 159 71.1
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 8.6e-58 227.3 132 78.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 1.5e-57 226.5 117 89.7
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.5e-57 225.7 107 95.3
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.5e-57 225.7 107 95.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.5e-57 223.8 139 74.1
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 5.7e-54 214.5 136 76.5
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-54 214.5 135 74.1
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-52 209.9 110 90.9
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 2.0e-51 206.1 157 66.9
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.0e-51 206.1 105 91.4
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.5e-51 205.3 134 75.4
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.3e-50 203.4 112 83.0
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 8.6e-50 200.7 159 62.3
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 8.6e-50 200.7 159 62.3
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 8.6e-50 200.7 159 62.3
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.5e-49 199.9 109 84.4
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 9.5e-49 197.2 100 88.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 9.5e-49 197.2 100 88.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 9.5e-49 197.2 100 88.0
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.7e-48 194.9 101 86.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 5.8e-46 188.0 102 83.3
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 7.5e-46 187.6 101 84.2
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 9.8e-46 187.2 89 97.8
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 9.8e-46 187.2 112 78.6
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.2e-45 186.0 100 83.0
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-44 183.3 109 80.7
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.9e-44 183.0 95 88.4
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.4e-44 182.6 162 60.5
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 2.0e-43 179.5 115 72.2
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.3e-42 176.0 109 76.1
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.3e-42 176.0 111 73.0
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.3e-41 172.2 150 65.3
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 9.5e-41 170.6 108 74.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.6e-40 169.9 89 87.6
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 8.1e-40 167.5 100 80.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 8.9e-39 164.1 84 88.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.2e-38 163.7 83 90.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.5e-38 163.3 83 90.4
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 2.0e-38 162.9 90 80.0
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 4.4e-38 161.8 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 5.8e-38 161.4 83 88.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 4.9e-37 158.3 83 86.7
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.9e-36 156.4 86 81.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-34 150.2 82 85.4
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 2.3e-34 149.4 87 79.3
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.1e-32 142.9 72 91.7
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 8.1e-32 141.0 78 80.8
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.8e-31 139.8 84 78.6
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.1e-31 139.0 91 72.5
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.2e-30 137.1 83 77.1
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.5e-30 136.7 78 80.8
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-30 136.0 68 91.2
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 7.6e-30 134.4 124 56.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.9e-28 129.8 65 89.2
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-26 123.6 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.6e-25 118.2 57 93.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 7.3e-25 117.9 110 56.4
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 6.2e-24 114.8 53 98.1
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.0e-22 109.8 55 87.3
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.4e-21 104.4 50 94.0
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.1e-20 104.0 58 79.3
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-20 103.6 69 68.1
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 2.4e-20 102.8 54 83.3
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 7.1e-20 101.3 99 53.5
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 1.0e-18 97.4 43 97.7
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 2.5e-17 92.8 53 75.5
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 3.6e-16 89.0 86 47.7
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.0e-14 83.2 41 87.8
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 9.9e-14 80.9 48 81.2
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 7.1e-12 74.7 39 84.6
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.9e-10 68.9 53 62.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 2.1e-08 63.2 32 87.5
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 6.2e-08 61.6 68 44.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.4e-07 59.7 91 31.9
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 9.0e-07 57.8 60 53.3
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.5e-06 57.0 87 32.2
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
BolSC35t60757H Brassica oleracea HOM05D001033 ORTHO05D004888 9.9e-06 54.3 23 100.0
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 9.9e-06 54.3 27 88.9


User provided reference genes

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