Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.0e-85 318.9 146 100.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 6.0e-82 307.4 159 91.2
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 6.6e-81 303.9 159 89.9
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 6.6e-81 303.9 159 90.6
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.9e-80 302.4 159 89.9
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-78 295.8 159 88.1
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 5.2e-78 294.3 154 90.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.9e-75 285.8 159 84.3
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.9e-75 285.8 159 84.3
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.9e-75 285.8 159 84.3
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 4.1e-75 284.6 159 83.6
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 7.1e-75 283.9 159 83.6
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 9.2e-75 283.5 159 82.4
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.2e-74 283.1 159 82.4
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 1.6e-74 282.7 159 83.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.1e-74 282.3 159 82.4
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.7e-74 282.0 159 82.4
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 4.6e-74 281.2 159 83.0
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 4.6e-74 281.2 159 83.0
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.0e-74 280.8 159 83.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 7.8e-74 280.4 159 81.8
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.0e-73 280.0 159 82.4
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.0e-73 280.0 159 81.1
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.3e-73 279.6 159 81.1
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.7e-73 279.3 159 81.1
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.7e-73 279.3 159 81.1
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.3e-73 278.9 159 79.9
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 3.0e-73 278.5 159 81.8
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 5.1e-73 277.7 158 82.3
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 6.6e-73 277.3 159 81.1
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 6.6e-73 277.3 160 81.2
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 8.7e-73 276.9 159 79.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.5e-72 276.2 159 79.9
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.5e-72 276.2 159 81.1
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-72 274.2 159 80.5
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 7.3e-72 273.9 159 80.5
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.6e-71 272.7 157 80.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.6e-71 272.7 157 80.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.6e-71 272.7 157 80.9
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 6.2e-71 270.8 159 79.2
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.4e-70 269.6 159 78.6
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.8e-70 269.2 146 87.0
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 3.1e-70 268.5 159 78.0
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.0e-69 265.8 158 77.8
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.6e-69 265.4 159 78.6
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 4.4e-69 264.6 159 77.4
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 5.8e-69 264.2 151 81.5
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 7.6e-69 263.8 157 80.3
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 1.3e-68 263.1 159 76.7
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.9e-68 261.9 149 84.6
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.4e-67 259.6 158 75.9
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.6e-66 256.1 146 82.9
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 2.1e-66 255.8 159 77.4
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 3.0e-65 251.9 144 81.2
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 3.0e-65 251.9 144 81.2
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 3.0e-65 251.9 144 81.2
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 5.1e-65 251.1 142 83.1
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.9e-64 249.2 144 79.9
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 4.3e-64 248.1 159 77.4
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.3e-64 248.1 143 82.5
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 5.3e-62 241.1 163 74.2
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.5e-61 239.6 159 71.1
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 2.6e-61 238.8 139 80.6
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.6e-61 237.3 159 71.7
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.9e-60 235.3 139 79.1
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 8.4e-60 233.8 139 80.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.9e-57 224.9 144 75.7
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.5e-56 222.2 134 79.1
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 2.4e-54 215.7 146 71.2
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.0e-54 213.8 134 77.6
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.6e-53 212.2 101 98.0
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-51 206.5 105 90.5
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 3.5e-50 201.8 153 67.3
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.6e-50 201.4 132 72.7
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-47 193.0 107 85.0
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-47 193.0 107 85.0
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.7e-47 191.8 107 80.4
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.1e-46 190.3 101 85.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.1e-46 190.3 102 84.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.8e-46 189.5 139 65.5
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 4.0e-46 188.3 97 88.7
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.3e-46 188.0 121 76.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 9.0e-46 187.2 89 97.8
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 3.4e-45 185.3 95 89.5
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.7e-44 183.0 136 68.4
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.9e-44 182.2 135 65.9
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 6.5e-44 181.0 93 89.2
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 1.9e-43 179.5 102 83.3
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 5.1e-41 171.4 105 76.2
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 5.1e-41 171.4 92 85.9
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.9e-40 169.5 159 55.3
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.9e-40 169.5 159 55.3
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.9e-40 169.5 159 55.3
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 9.7e-40 167.2 109 74.3
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-39 164.5 100 77.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-39 164.5 100 77.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-39 164.5 100 77.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 8.2e-39 164.1 84 88.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.4e-38 163.3 83 90.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.8e-38 162.9 83 90.4
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.1e-38 162.2 101 75.2
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 3.1e-38 162.2 137 58.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 5.3e-38 161.4 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 6.9e-38 161.0 83 88.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 5.9e-37 157.9 83 86.7
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.8e-36 155.2 100 73.0
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.1e-35 153.7 159 55.3
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 2.1e-34 149.4 87 79.3
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.7e-34 149.1 109 69.7
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 3.6e-34 148.7 105 68.6
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 7.9e-34 147.5 149 59.1
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.1e-32 143.7 111 63.1
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 1.9e-32 142.9 72 91.7
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.3e-32 141.7 109 65.1
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.7e-31 139.8 84 78.6
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.8e-31 139.0 91 72.5
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-30 136.7 83 77.1
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.4e-30 136.0 68 91.2
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.7e-29 131.0 90 67.8
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-28 129.8 65 89.2
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-26 123.6 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.1e-25 118.2 57 93.0
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 8.8e-25 117.5 111 55.0
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.0e-24 116.3 82 70.7
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 5.7e-24 114.8 53 98.1
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 5.7e-24 114.8 59 86.4
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-22 110.5 78 67.9
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.8e-22 109.8 55 87.3
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 5.9e-21 104.8 78 66.7
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 7.7e-21 104.4 50 94.0
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 2.9e-20 102.4 99 53.5
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.9e-19 99.8 52 84.6
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 7.2e-19 97.8 73 58.9
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-17 93.2 40 100.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.8e-14 83.2 41 87.8
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-14 80.9 48 81.2
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 7.7e-13 77.8 40 82.5
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 6.5e-12 74.7 39 84.6
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.5e-11 73.6 69 52.2
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.6e-10 68.9 53 62.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 2.0e-08 63.2 32 87.5
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-08 61.6 68 44.1
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 3.7e-07 58.9 53 52.8
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-06 55.5 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 9.1e-06 54.3 27 88.9


User provided reference genes

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