Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 4.1e-22 107.1 50 100.0
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 4.1e-22 107.1 50 100.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 9.0e-22 105.9 50 98.0
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 3.4e-21 104.0 50 98.0
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 3.4e-21 104.0 50 98.0
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 5.9e-21 103.2 50 96.0
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 2.2e-20 101.3 50 92.0
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 3.8e-20 100.5 50 90.0
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 5.0e-20 100.1 50 90.0
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 5.0e-20 100.1 50 90.0
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 8.5e-20 99.4 50 90.0
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 1.4e-19 98.6 50 88.0
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.4e-19 98.6 50 88.0
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.4e-19 98.6 50 86.0
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.9e-19 98.2 50 88.0
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.9e-19 98.2 47 93.6
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.9e-19 98.2 50 86.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 86.0
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 86.0
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 88.0
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 4.2e-19 97.1 50 84.0
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 85.7
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 85.7
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 85.7
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 4.2e-19 97.1 49 85.7
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 4.2e-19 97.1 50 84.0
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 4.2e-19 97.1 50 84.0
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 4.2e-19 97.1 50 84.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 7.2e-19 96.3 50 86.0
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 7.2e-19 96.3 50 86.0
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 9.4e-19 95.9 50 86.0
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.6e-18 95.1 50 84.0
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 2.1e-18 94.7 50 86.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 3.6e-18 94.0 50 80.0
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.6e-18 93.6 50 84.0
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 4.6e-18 93.6 50 86.0
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 6.1e-18 93.2 50 84.0
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 3.9e-17 90.5 49 81.6
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 1.5e-16 88.6 50 80.0
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.0e-16 88.2 50 76.0
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 3.3e-16 87.4 50 76.0
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 4.3e-16 87.0 48 77.1
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.3e-15 85.5 50 78.0
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.3e-15 85.5 48 75.0
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.2e-15 84.7 50 76.0
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 3.1e-14 80.9 49 71.4
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 2.6e-13 77.8 47 70.2
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 7.7e-13 76.3 41 73.2
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.0e-12 75.9 37 86.5
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 1.7e-12 75.1 41 70.7
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 1.1e-11 72.4 49 61.2
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 3.2e-11 70.9 39 79.5
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 7.2e-11 69.7 37 78.4
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 1.2e-10 68.9 52 61.5
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 1.2e-10 68.9 52 61.5
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.7e-10 67.8 41 73.2
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.7e-10 67.8 41 73.2
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 1.0e-09 65.9 30 96.7
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 1.4e-09 65.5 36 75.0
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.7e-07 58.5 31 77.4
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.7e-07 58.5 31 77.4
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 1.7e-07 58.5 31 77.4
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 3.7e-07 57.4 40 60.0
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 3.7e-07 57.4 28 89.3
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 4.8e-07 57.0 40 57.5
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 1.4e-06 55.5 34 67.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 1.4e-06 55.5 34 67.6
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 1.8e-06 55.1 34 67.6
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 2.4e-06 54.7 34 64.7
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 7.0e-06 53.1 49 44.9
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 9.1e-06 52.8 34 64.7


User provided reference genes

Program Settings