Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.2e-95 350.9 192 100.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.9e-91 339.3 185 100.0
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.4e-91 339.0 185 99.5
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 8.7e-89 330.5 185 97.3
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 7.6e-85 317.4 185 91.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.3e-81 306.6 185 89.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.1e-80 303.5 185 91.4
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 5.6e-80 301.2 185 87.0
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.1e-78 297.0 185 89.7
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 8.4e-76 287.3 184 88.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 9.3e-75 283.9 184 87.0
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 9.3e-75 283.9 184 87.0
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 9.3e-75 283.9 184 87.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.7e-74 282.3 184 87.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.7e-74 282.3 184 87.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.0e-69 266.2 198 77.3
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.6e-66 255.0 185 76.2
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 5.7e-64 248.1 186 77.4
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.2e-60 236.1 182 68.7
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 8.5e-60 234.2 185 68.6
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.9e-59 233.0 183 69.4
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.5e-59 232.6 183 68.9
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 3.2e-59 232.3 183 67.8
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 3.2e-59 232.3 183 67.8
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.2e-58 230.3 183 68.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.6e-58 229.9 183 68.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.6e-58 228.8 183 68.9
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 6.1e-58 228.0 176 69.3
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 7.9e-58 227.6 185 66.5
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.0e-57 227.3 176 68.8
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-57 226.9 184 72.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.8e-57 226.5 182 66.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.3e-57 226.1 183 68.3
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.9e-57 225.3 185 65.9
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 3.9e-57 225.3 184 65.8
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.1e-57 224.9 187 67.4
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 5.1e-57 224.9 198 63.6
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.5e-56 223.4 182 66.5
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 7.4e-56 221.1 182 65.9
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 9.7e-56 220.7 183 66.1
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.3e-55 220.3 182 65.9
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 2.8e-55 219.2 182 64.8
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 2.8e-55 219.2 163 77.9
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.8e-55 218.4 194 63.9
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 6.3e-55 218.0 181 64.6
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 6.3e-55 218.0 183 61.2
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.1e-54 217.2 182 61.5
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.4e-54 216.9 184 64.1
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.1e-54 215.7 182 62.1
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 4.1e-54 215.3 182 64.8
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 9.1e-54 214.2 182 64.3
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 9.1e-54 214.2 177 65.5
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 9.1e-54 214.2 197 60.4
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.2e-53 213.8 177 63.3
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.5e-53 211.8 182 62.6
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.5e-53 211.8 182 62.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 5.9e-53 211.5 184 63.0
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 7.7e-53 211.1 185 62.2
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.7e-52 209.9 182 63.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.7e-52 209.9 185 64.3
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 3.8e-52 208.8 182 63.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 5.0e-52 208.4 181 63.0
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 6.5e-52 208.0 182 62.6
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 6.5e-52 208.0 192 59.9
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.1e-51 207.2 185 61.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.1e-51 207.2 185 61.1
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.4e-51 206.8 182 61.5
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.4e-51 206.8 182 60.4
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.9e-51 206.5 185 61.1
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.4e-51 204.1 183 59.6
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.2e-50 203.8 182 60.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.6e-50 203.4 182 60.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.6e-50 203.4 182 60.4
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 2.1e-50 203.0 182 58.8
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.7e-50 202.6 182 59.3
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 3.6e-50 202.2 181 61.3
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.6e-50 202.2 156 71.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 6.1e-50 201.4 183 60.7
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.0e-49 200.7 195 59.0
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.8e-49 199.9 183 60.1
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.3e-49 199.5 177 61.6
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 5.1e-49 198.4 183 59.6
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-48 197.2 183 58.5
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.0e-48 196.4 182 59.9
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 7.4e-48 194.5 182 57.1
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.8e-47 192.6 169 62.1
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 6.3e-47 191.4 185 58.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 8.2e-47 191.0 182 58.2
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.4e-46 190.3 178 59.6
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.4e-46 189.5 182 56.6
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.5e-45 186.8 177 59.3
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 3.4e-45 185.7 190 53.7
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 3.4e-45 185.7 187 55.1
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 4.5e-45 185.3 169 60.9
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 5.9e-45 184.9 203 52.2
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 7.7e-45 184.5 183 56.3
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.3e-44 183.7 183 55.7
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 8.5e-44 181.0 190 51.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.9e-43 179.9 177 54.2
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 3.9e-41 172.2 130 74.6
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 3.9e-41 172.2 130 74.6
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.1e-40 170.6 183 55.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.3e-40 169.1 183 55.7
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 9.7e-40 167.5 185 50.8
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 2.6e-37 159.5 183 49.2
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.3e-36 157.1 181 48.6
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.1e-35 154.1 182 51.6
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 4.2e-35 152.1 176 51.1
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 4.2e-35 152.1 182 48.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.7e-34 149.4 207 47.3
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 8.8e-33 144.4 175 48.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.2e-32 144.1 185 48.6
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.2e-32 144.1 175 48.6
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.3e-31 140.6 192 45.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-31 139.8 265 39.2
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.8e-31 139.4 183 44.3
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.8e-31 139.4 182 44.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.8e-30 136.7 86 82.6
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 5.9e-29 131.7 173 46.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 3.8e-28 129.0 177 45.8
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.0e-26 121.3 183 44.3
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.4e-25 120.6 156 47.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 3.0e-25 119.4 182 41.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.6e-24 116.3 182 42.9
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.7e-23 113.6 121 52.9
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.4e-22 110.5 189 38.1
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 8.6e-20 101.3 117 49.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 3.3e-19 99.4 92 58.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.6e-18 97.1 83 55.4
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.4e-17 94.0 72 70.8
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 4.0e-17 92.4 72 66.7
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 5.2e-17 92.0 82 57.3
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-16 90.9 79 54.4
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 1.3e-15 87.4 68 70.6
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.3e-15 87.4 72 68.1
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-14 84.3 136 39.0
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.6e-13 80.5 77 59.7
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 2.0e-13 80.1 172 31.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 4.5e-13 79.0 112 42.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 3.8e-12 75.9 156 32.1
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.3e-09 66.6 51 66.7
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 6.8e-09 65.1 51 68.6
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 8.9e-09 64.7 51 66.7
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 7.5e-08 61.6 163 30.7
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 9.8e-08 61.2 47 57.4
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.2e-07 60.1 99 36.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.9e-07 59.7 55 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 2.4e-06 56.6 73 43.8


User provided reference genes

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