Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.9e-165 585.9 315 100.0
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 4.8e-129 464.9 316 83.5
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 7.3e-85 318.2 318 65.1
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-84 316.6 332 63.3
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.0e-83 312.4 333 63.1
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 7.6e-82 308.1 347 60.2
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.3e-81 307.4 319 64.9
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 4.0e-75 285.8 340 56.2
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 4.9e-73 278.9 245 72.2
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 5.4e-64 248.8 242 65.7
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 3.0e-62 243.0 327 53.8
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 3.4e-50 203.0 240 59.6
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.8e-50 202.2 374 42.5
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.0e-41 174.9 314 44.6
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.0e-41 174.9 320 42.8
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 5.5e-40 169.1 317 44.2
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 7.2e-40 168.7 323 42.4
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 6.7e-38 162.2 334 41.9
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 4.3e-37 159.5 336 41.1
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 2.8e-36 156.8 296 42.9
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.8e-35 154.1 328 38.7
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.3e-33 147.9 329 38.3
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 5.0e-33 146.0 335 37.9
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 4.2e-32 142.9 332 38.9
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 9.4e-32 141.7 332 39.5
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.2e-31 141.4 320 37.8
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.8e-30 137.5 372 34.1
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.5e-24 117.1 272 39.3
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.3e-22 110.5 393 29.5
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.3e-20 104.8 149 47.0
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.6e-18 97.8 374 29.7
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.1e-16 91.7 471 24.8
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.5e-16 91.3 458 26.9
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.2e-16 89.0 486 27.0
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 3.0e-14 83.6 456 26.1
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.2e-13 81.6 353 27.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.2e-13 81.6 507 24.5
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.5e-13 81.3 480 25.2
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.0e-13 80.9 74 52.7
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 3.3e-13 80.1 74 51.4
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 3.3e-13 80.1 313 31.0
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 5.7e-13 79.3 74 56.8
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 5.7e-13 79.3 74 52.7
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.2e-12 77.4 307 29.0
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.8e-12 77.0 294 30.3
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.8e-12 77.0 139 38.1
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.8e-12 76.3 79 49.4
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 4.8e-12 76.3 485 26.6
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 6.3e-12 75.9 388 26.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 8.2e-12 75.5 142 40.8
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 8.2e-12 75.5 528 24.6
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 1.1e-11 75.1 74 54.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.4e-11 73.9 78 52.6
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.4e-11 73.9 74 52.7
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 4.1e-11 73.2 74 54.1
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 4.1e-11 73.2 384 25.5
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 7.0e-11 72.4 371 27.0
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 7.0e-11 72.4 376 25.5
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 7.0e-11 72.4 72 45.8
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.6e-10 71.2 479 24.2
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.6e-10 71.2 484 24.4
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.0e-10 70.9 71 52.1
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 4.5e-10 69.7 78 46.2
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 5.9e-10 69.3 494 26.3
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.0e-09 68.6 187 31.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.7e-09 67.8 201 35.3
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.7e-09 67.8 75 44.0
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 2.2e-09 67.4 458 24.2
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 5.0e-09 66.2 475 24.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 5.0e-09 66.2 132 34.8
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 6.5e-09 65.9 72 48.6
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 6.5e-09 65.9 77 44.2
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 8.5e-09 65.5 66 51.5
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 8.5e-09 65.5 72 43.1
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 2.5e-08 63.9 65 46.2
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 4.2e-08 63.2 225 30.2
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 5.5e-08 62.8 72 44.4
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 5.5e-08 62.8 127 34.6
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.4e-08 62.0 219 31.1
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 9.4e-08 62.0 176 31.2
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.2e-07 61.6 264 26.9
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.6e-07 61.2 213 31.9
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.6e-07 61.2 207 32.4
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 2.1e-07 60.8 197 31.5
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.1e-07 60.8 504 24.4
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.7e-07 60.5 191 30.9
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.6e-07 60.1 471 22.7
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 4.7e-07 59.7 114 36.8
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 4.7e-07 59.7 74 43.2
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 1.0e-06 58.5 46 58.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.4e-06 58.2 216 28.2
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.8e-06 57.8 75 38.7
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.8e-06 57.8 187 31.6
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 2.3e-06 57.4 590 21.7
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 2.3e-06 57.4 71 38.0
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 3.0e-06 57.0 178 30.3
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 4.0e-06 56.6 128 34.4
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 5.2e-06 56.2 225 30.2
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 5.2e-06 56.2 283 25.4
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 6.8e-06 55.8 72 37.5
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 6.8e-06 55.8 206 30.1
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 6.8e-06 55.8 148 33.8


User provided reference genes

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