Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 4.1e-257 891.0 469 100.0
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.2e-254 880.2 469 98.5
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.4e-252 875.9 469 97.7
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.2e-248 862.8 469 96.4
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-245 852.4 470 95.3
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.6e-245 852.4 470 95.3
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.6e-245 851.3 469 94.2
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 8.8e-244 846.7 471 94.9
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 7.4e-243 843.6 493 90.9
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 7.4e-243 843.6 469 93.8
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 6.1e-237 823.9 469 91.9
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.0e-236 823.2 469 91.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.3e-235 818.1 469 90.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 7.5e-235 817.0 469 90.4
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.7e-234 815.8 469 90.0
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.2e-234 815.5 469 90.2
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 90.6
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 90.2
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 90.2
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.4e-233 812.8 469 90.0
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.8e-233 812.4 469 89.8
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 4.7e-229 797.7 497 84.9
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 3.4e-227 791.6 467 87.4
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 3.4e-227 791.6 469 86.8
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 4.8e-226 787.7 469 86.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 6.3e-226 787.3 469 86.8
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 6.3e-226 787.3 469 86.8
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.1e-225 786.6 469 85.9
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.4e-225 786.2 469 86.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 86.4
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 9.1e-225 783.5 469 85.9
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 2.9e-223 778.5 469 85.7
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.9e-223 778.5 469 85.7
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 5.0e-223 777.7 469 85.7
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 5.0e-223 777.7 469 86.1
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.9e-222 775.8 471 86.4
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.5e-222 775.4 469 84.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 5.5e-222 774.2 469 84.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 7.2e-222 773.9 469 85.1
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 7.2e-222 773.9 469 85.3
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 9.5e-222 773.5 469 85.9
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.2e-221 773.1 469 84.2
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.1e-221 772.3 469 85.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.7e-221 771.2 469 84.6
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 4.7e-221 771.2 469 83.6
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 8.0e-221 770.4 469 85.3
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.0e-220 770.0 469 84.6
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.8e-220 769.2 469 84.4
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 2.3e-220 768.8 469 84.9
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.3e-220 768.8 469 84.4
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 84.6
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.2e-219 766.5 469 84.6
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 84.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 84.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 7.5e-219 763.8 470 84.0
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 9.8e-219 763.5 469 83.8
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 9.8e-219 763.5 468 83.1
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 2.8e-218 761.9 469 82.9
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.7e-218 761.5 470 84.3
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 84.2
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 82.9
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.4e-217 758.8 463 84.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 83.4
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 83.2
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 3.1e-217 758.4 470 83.2
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 5.4e-217 757.7 468 83.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 5.4e-217 757.7 470 83.2
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 5.9e-216 754.2 468 83.5
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 5.9e-216 754.2 470 83.2
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 7.8e-216 753.8 468 83.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 5.0e-215 751.1 470 82.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 6.6e-215 750.7 506 78.9
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 8.6e-215 750.4 470 83.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.9e-214 749.2 505 78.4
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.8e-212 742.7 469 83.6
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 8.9e-212 740.3 469 82.1
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 2.2e-210 735.7 493 78.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.9e-209 732.6 469 80.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 4.1e-209 731.5 469 80.8
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 7.8e-208 727.2 449 84.6
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 5.0e-207 724.5 545 72.5
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.2e-203 713.4 469 79.5
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.2e-203 713.4 441 83.4
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 9.8e-203 710.3 470 79.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.9e-199 698.4 491 76.2
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.6e-197 693.0 470 78.3
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.3e-194 683.3 492 74.0
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 9.2e-193 677.2 418 83.7
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.9e-190 669.5 418 82.1
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.9e-190 669.5 418 82.1
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.6e-187 659.1 397 86.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.3e-186 656.8 425 81.2
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.8e-186 655.2 461 76.1
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.9e-185 652.9 468 75.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 5.6e-182 641.3 469 70.6
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.8e-178 628.6 423 77.5
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.4e-178 627.5 469 72.5
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.1e-176 622.9 383 84.6
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.1e-166 590.5 465 66.5
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.9e-161 573.2 350 82.3
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 3.2e-161 572.4 469 67.0
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 3.2e-161 572.4 374 78.9
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.6e-160 570.1 340 88.5
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 5.1e-159 565.1 373 78.6
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 6.7e-159 564.7 312 92.3
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.5e-158 562.8 470 61.5
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 8.2e-157 557.8 365 80.3
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 2.6e-147 526.2 324 85.5
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.0e-130 468.8 282 87.2
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 4.4e-126 455.7 365 67.4
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.5e-122 441.8 324 74.1
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.1e-108 396.4 246 85.0
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 8.0e-88 328.6 312 60.6
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.0e-82 311.6 301 56.5
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.3e-82 311.2 238 70.2
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.6e-80 303.1 182 80.8
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 8.9e-79 298.5 505 37.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.5e-78 297.7 173 85.0
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 4.9e-77 292.7 160 98.8
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.5e-73 281.2 210 62.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.9e-71 271.9 294 53.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.2e-68 263.5 407 46.4
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-65 255.0 139 99.3
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 3.4e-54 216.9 195 65.1
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.4e-52 210.7 331 38.4
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.4e-52 209.5 119 93.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 4.0e-47 193.4 485 30.9
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.6e-43 181.4 107 78.5
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.0e-43 179.5 111 86.5
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 5.1e-42 176.4 111 82.9
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 8.7e-42 175.6 105 81.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-36 157.1 91 89.0
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 8.7e-34 149.1 87 89.7
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-30 136.3 76 85.5
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 5.0e-29 133.3 72 90.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.5e-28 131.0 72 88.9
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.4e-26 125.2 72 83.3
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.5e-25 120.9 74 78.4
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 9.7e-25 119.0 74 79.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-24 116.7 79 75.9
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 5.0e-21 106.7 99 57.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.9e-20 104.8 57 86.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.1e-19 99.8 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.1e-17 95.5 52 96.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 5.0e-13 80.1 48 83.3
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-12 77.8 46 91.3
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 4.2e-12 77.0 54 77.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.2e-12 76.3 52 80.8
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.8e-10 71.6 74 52.7


User provided reference genes

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