Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 2387.1 1233 100.0
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 2102.0 1235 89.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 2020.0 1231 85.1
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 2018.4 1237 84.8
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1925.2 1230 81.8
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1882.8 1235 79.9
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1858.6 1239 78.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1824.7 1253 78.2
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1817.4 1253 78.0
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1816.6 1245 78.7
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1793.1 1034 89.4
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1752.3 1197 77.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1748.0 1249 76.7
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1707.6 1235 74.0
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1631.3 1247 69.4
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1307.4 1265 56.2
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1299.3 1266 56.3
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1262.7 1264 54.3
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1257.7 1254 54.1
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1253.4 1264 54.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1251.9 1258 54.2
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1245.0 851 79.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1238.4 1259 53.9
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1235.3 1266 53.2
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1234.9 1256 53.3
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1233.4 1252 54.2
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1232.6 1245 53.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1227.2 1245 53.3
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1226.5 1263 53.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1218.8 1253 52.8
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1216.8 1245 53.0
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1216.4 1247 52.8
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1246 52.5
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1203.7 1266 52.1
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1202.2 1266 52.2
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1198.0 1257 53.5
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1196.8 1268 52.2
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1169.8 1261 50.7
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1167.9 1262 51.8
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1278 50.2
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1152.9 1265 50.6
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1151.7 1256 50.9
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1149.8 1091 56.0
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1256 51.5
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1146.0 1262 50.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1146.0 1240 50.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1270 50.5
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1140.9 1252 50.2
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1140.6 1257 50.3
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1140.2 1251 50.1
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1131.7 1258 50.6
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1130.2 1277 50.0
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1267 49.7
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1175 52.6
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1126.7 1275 49.5
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1120.1 1230 51.1
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1115.9 1252 50.3
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1107.8 1254 50.4
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1107.4 1255 50.3
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1104.4 1258 49.3
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1255 48.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1261 48.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1094.3 1255 49.6
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1094.0 1250 48.3
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1089.7 1263 48.2
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1089.3 1249 50.0
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1082.4 1244 47.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1076.6 1259 48.8
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 4.2e-311 1071.6 1251 49.0
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 8.4e-310 1067.4 1261 47.6
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 1.4e-309 1066.6 1249 48.8
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 1.2e-308 1063.5 1257 48.5
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 1.4e-304 1050.0 1285 47.1
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 4.9e-302 1041.6 1234 47.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.2e-301 1038.9 1118 52.1
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 3.9e-299 1031.9 1257 47.2
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.1e-299 1031.6 1238 47.1
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 3.3e-298 1028.9 1278 46.4
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 3.1e-296 1022.3 1115 51.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 8.9e-296 1020.8 1265 46.4
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 7.6e-295 1017.7 1234 46.2
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 5.4e-293 1011.5 1249 46.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 4.6e-292 1008.4 1173 49.1
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 7.8e-292 1007.7 1235 47.5
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 3.3e-290 1002.3 1301 46.0
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.3e-289 1000.3 1250 46.2
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.7e-286 989.9 1253 46.6
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 1.4e-285 986.9 929 57.6
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 6.0e-284 981.5 1017 52.9
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.0e-283 980.7 930 56.5
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 3.9e-283 978.8 852 62.3
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 4.0e-272 942.2 1259 43.9
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 8.0e-236 821.6 977 47.0
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 6.1e-212 742.3 1275 37.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 7.8e-207 725.3 1236 38.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 8.6e-206 721.8 1003 44.3
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.7e-196 689.5 937 43.5
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.4e-195 688.0 897 44.7
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.0e-195 686.4 1118 37.4
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 6.7e-158 562.8 1129 34.1
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.3e-155 553.1 567 52.9
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 9.0e-155 552.4 879 38.5
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 7.1e-152 542.7 770 40.5
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 9.6e-149 532.3 820 39.4
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.3e-142 511.1 767 39.6
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 3.8e-137 493.8 431 61.5
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.9e-120 438.3 648 40.3
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.2e-104 383.3 568 39.8
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 5.7e-101 373.6 365 56.7
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.7e-95 354.0 353 57.2
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.4e-94 352.4 342 58.5
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 4.4e-93 347.4 342 58.2
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.8e-90 336.7 458 42.4
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.0e-89 334.0 383 47.3
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 4.7e-87 327.4 236 68.6
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.1e-78 298.1 657 32.7
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.5e-72 279.3 449 35.4
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 9.0e-62 243.4 488 33.4
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-54 217.6 350 34.0
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 4.5e-53 214.5 395 33.2
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.4e-51 209.5 372 38.2
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.8e-44 184.9 294 38.1
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.3e-33 149.8 169 49.7
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.9e-33 148.3 281 33.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.2e-31 142.5 329 34.0
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 9.7e-24 117.1 411 27.0
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.7e-18 99.0 119 41.2
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 3.7e-15 88.6 203 32.0
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 5.0e-12 78.2 104 37.5
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 1.1e-11 77.0 104 36.5
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 4.2e-11 75.1 126 34.9
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 7.2e-11 74.3 104 36.5
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.5e-08 66.6 255 24.3
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 9.7e-08 63.9 61 47.5


User provided reference genes

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