Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.7e-24 115.5 75 100.0
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.2e-19 98.6 75 90.7
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 2.2e-19 98.6 74 90.5
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 1.4e-18 95.9 75 85.3
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.2e-17 92.8 75 84.0
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.5e-17 91.3 116 61.2
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 5.9e-17 90.5 75 80.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.0e-16 89.7 75 80.0
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.0e-16 87.4 73 75.3
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.0e-16 87.4 74 81.1
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.5e-16 87.0 74 74.3
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 8.5e-16 86.7 73 75.3
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.1e-15 86.3 75 73.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 73 75.3
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 73 75.3
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 73 75.3
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.9e-15 85.5 75 82.7
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.2e-15 84.7 73 75.3
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.2e-15 84.7 73 75.3
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 4.2e-15 84.3 75 76.0
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 5.5e-15 84.0 75 74.7
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 7.2e-15 83.6 73 76.7
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 9.4e-15 83.2 73 75.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 9.4e-15 83.2 75 72.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.2e-14 82.8 75 76.0
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.2e-14 82.8 75 74.7
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.2e-14 82.8 73 72.6
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-14 82.8 75 68.0
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.6e-14 82.4 75 77.3
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.1e-14 82.0 75 74.7
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 2.1e-14 82.0 75 70.7
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.1e-14 82.0 69 79.7
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.6e-14 81.3 75 72.0
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.6e-14 81.3 76 78.9
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.6e-14 81.3 75 69.3
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 3.6e-14 81.3 75 76.0
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 4.7e-14 80.9 76 77.6
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.7e-14 80.9 75 73.3
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.7e-14 80.9 75 73.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 8.0e-14 80.1 76 75.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 8.0e-14 80.1 76 75.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 8.0e-14 80.1 76 75.0
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 8.0e-14 80.1 76 75.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 8.0e-14 80.1 75 65.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 8.0e-14 80.1 75 65.3
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 8.0e-14 80.1 74 62.2
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.0e-13 79.7 75 70.7
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.0e-13 79.7 75 70.7
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.4e-13 79.3 75 70.7
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.8e-13 79.0 75 74.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 63.5
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 1.8e-13 79.0 71 70.4
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.8e-13 79.0 75 66.7
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 2.3e-13 78.6 75 68.0
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 3.0e-13 78.2 75 69.3
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 3.0e-13 78.2 75 70.7
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 4.0e-13 77.8 75 72.0
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 5.2e-13 77.4 72 72.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.2e-13 77.4 75 62.7
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.2e-13 77.4 75 64.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.2e-13 77.4 75 64.0
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 6.8e-13 77.0 75 77.3
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 6.8e-13 77.0 75 77.3
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 6.8e-13 77.0 75 70.7
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 8.8e-13 76.6 75 62.7
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 8.8e-13 76.6 75 62.7
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 8.8e-13 76.6 75 73.3
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 8.8e-13 76.6 75 73.3
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.5e-12 75.9 75 65.3
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.0e-12 75.5 75 73.3
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 2.0e-12 75.5 75 73.3
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.0e-12 75.5 75 73.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.6e-12 75.1 75 62.7
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 62.7
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 72.0
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 62.7
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 72.0
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 57.3
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 64.0
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 66.7
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 4.4e-12 74.3 76 60.5
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.4e-12 74.3 75 64.0
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 5.7e-12 73.9 75 70.7
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 5.7e-12 73.9 77 64.9
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 7.5e-12 73.6 73 72.6
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.5e-12 73.6 75 73.3
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.5e-12 73.6 75 58.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 9.7e-12 73.2 75 61.3
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.3e-11 72.8 75 66.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.3e-11 72.8 73 71.2
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.3e-11 72.8 75 60.0
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.7e-11 72.4 77 68.8
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.7e-11 72.4 75 58.7
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.7e-11 72.4 76 69.7
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 76 69.7
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 2.2e-11 72.0 73 68.5
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.2e-11 72.0 75 50.7
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.8e-11 71.6 75 66.7
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 2.8e-11 71.6 48 81.2
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 3.7e-11 71.2 76 75.0
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.7e-11 71.2 77 61.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 3.7e-11 71.2 83 68.7
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 4.8e-11 70.9 75 69.3
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 6.3e-11 70.5 77 71.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 8.3e-11 70.1 76 69.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.1e-10 69.7 74 70.3
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.1e-10 69.7 76 67.1
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.4e-10 69.3 76 73.7
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.4e-10 69.3 76 61.8
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-10 69.3 73 68.5
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.4e-10 68.6 77 62.3
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.4e-10 68.6 74 58.1
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 3.1e-10 68.2 75 68.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 3.1e-10 68.2 73 67.1
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 5.3e-10 67.4 72 70.8
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 5.3e-10 67.4 73 60.3
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 7.0e-10 67.0 75 72.0
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 9.1e-10 66.6 75 68.0
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 9.1e-10 66.6 117 52.1
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-09 66.2 75 68.0
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.6e-09 65.9 48 72.9
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.6e-09 65.9 75 65.3
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.0e-09 65.5 74 60.8
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 2.7e-09 65.1 74 58.1
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 4.5e-09 64.3 72 66.7
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 4.5e-09 64.3 75 56.0
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 4.5e-09 64.3 73 65.8
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 5.9e-09 63.9 48 68.8
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 5.9e-09 63.9 47 74.5
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.3e-08 62.8 92 59.8
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.3e-08 62.8 48 66.7
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 2.9e-08 61.6 73 56.2
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.0e-08 60.8 65 69.2
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.0e-08 60.8 75 64.0
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 5.0e-08 60.8 68 58.8
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 6.5e-08 60.5 75 65.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.5e-08 60.1 73 60.3
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.5e-08 60.1 73 60.3
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.5e-08 60.1 73 60.3
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.5e-08 60.1 73 60.3
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 75 66.7
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 1.9e-07 58.9 73 60.3
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.9e-07 58.9 73 60.3
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.9e-07 58.9 65 72.3
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 4.2e-07 57.8 71 56.3
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 5.5e-07 57.4 64 62.5
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 5.5e-07 57.4 75 68.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 7.2e-07 57.0 76 51.3
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.2e-06 56.2 69 52.2
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 1.6e-06 55.8 75 62.7
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.6e-06 55.8 72 55.6
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 2.7e-06 55.1 69 52.2
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 4.7e-06 54.3 72 54.2


User provided reference genes

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