Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G18460 Arabidopsis lyrata HOM05D000359 ORTHO05D080501 5.1e-44 180.6 89 100.0
Sp3g04300 Schrenkiella parvula HOM05D000359 ORTHO05D000251 1.2e-16 89.7 64 71.9
AT3G05470 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 1.6e-16 89.4 64 71.9
AL3G16070 Arabidopsis lyrata HOM05D000359 ORTHO05D000251 4.5e-16 87.8 64 70.3
BraA05t19069Z Brassica rapa HOM05D000359 ORTHO05D000251 5.9e-16 87.4 64 71.9
CARHR079850 Cardamine hirsuta HOM05D000359 ORTHO05D000251 5.9e-16 87.4 64 70.3
Thhalv10020037m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 1.0e-15 86.7 64 68.8
BcaC05g30119 Brassica carinata HOM05D000359 ORTHO05D000251 1.3e-15 86.3 64 70.3
BcaC05g30165 Brassica carinata HOM05D000359 ORTHO05D000251 1.3e-15 86.3 64 70.3
C05p61780 Brassica napus HOM05D000359 ORTHO05D000251 1.3e-15 86.3 64 70.3
BolC5t34834H Brassica oleracea HOM05D000359 ORTHO05D000251 1.3e-15 86.3 64 70.3
BraA03t12586Z Brassica rapa HOM05D000359 ORTHO05D000251 3.8e-15 84.7 64 67.2
BcaB04g19267 Brassica carinata HOM05D000359 ORTHO05D000251 8.6e-15 83.6 64 65.6
Aa31LG5G15930 Aethionema arabicum HOM05D000359 ORTHO05D000251 1.1e-14 83.2 64 68.8
A03p34140 Brassica napus HOM05D000359 ORTHO05D000251 1.5e-14 82.8 64 65.6
C03p41520 Brassica napus HOM05D000359 ORTHO05D000251 1.5e-14 82.8 64 65.6
Carub.0003s0476 Capsella rubella HOM05D000359 ORTHO05D000251 1.5e-14 82.8 64 65.6
BolC3t16433H Brassica oleracea HOM05D000359 ORTHO05D000251 1.6e-13 79.3 61 65.6
THA.LOC104818709 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 6.1e-13 77.4 64 62.5
QL03p021605 Quercus lobata HOM05D000359 ORTHO05D000251 7.5e-11 70.5 54 66.7
Ciclev10000203m.g Citrus clementina HOM05D000359 ORTHO05D000251 1.3e-10 69.7 53 66.0
Lalb_Chr02g0148171 Lupinus albus HOM05D000359 ORTHO05D000251 1.3e-10 69.7 49 71.4
Duzib177G0755 Durio zibethinus HOM05D000359 ORTHO05D000251 1.7e-10 69.3 60 61.7
CiPaw.08G162600 Carya illinoinensis HOM05D000359 ORTHO05D000251 2.2e-10 68.9 53 66.0
Eucgr.B01920 Eucalyptus grandis HOM05D000359 ORTHO05D000251 2.2e-10 68.9 53 66.0
Eucgr.B01924 Eucalyptus grandis HOM05D000359 ORTHO05D000251 2.2e-10 68.9 53 66.0
Eucgr.L02129 Eucalyptus grandis HOM05D000359 ORTHO05D000251 2.8e-10 68.6 53 66.0
Potri.013G017900 Populus trichocarpa HOM05D000359 ORTHO05D000251 3.7e-10 68.2 53 66.0
Sabra13G0020800 Salix brachista HOM05D000062 ORTHO05D000043 3.7e-10 68.2 53 66.0
Gohir.A11G267200 Gossypium hirsutum HOM05D000359 ORTHO05D000251 6.3e-10 67.4 53 66.0
Lalb_Chr06g0167691 Lupinus albus HOM05D000359 ORTHO05D000251 6.3e-10 67.4 53 66.0
Thecc.05G312100 Theobroma cacao HOM05D000359 ORTHO05D000251 6.3e-10 67.4 54 64.8
BcaC09g47827 Brassica carinata HOM05D000359 ORTHO05D000251 8.3e-10 67.0 55 61.8
Gohir.D11G277200 Gossypium hirsutum HOM05D000359 ORTHO05D000251 8.3e-10 67.0 53 66.0
Gorai.007G299400 Gossypium raimondii HOM05D000359 ORTHO05D000251 8.3e-10 67.0 53 66.0
Manes.08G118600 Manihot esculenta HOM05D000359 ORTHO05D000251 1.1e-09 66.6 54 63.0
Potri.005G026300 Populus trichocarpa HOM05D000359 ORTHO05D000251 1.1e-09 66.6 53 64.2
Prupe.6G321600 Prunus persica HOM05D000359 ORTHO05D000251 1.4e-09 66.2 49 67.3
PGR083G1629 Punica granatum HOM05D000359 ORTHO05D000251 1.4e-09 66.2 53 62.3
Gorai.013G125400 Gossypium raimondii HOM05D000359 ORTHO05D000251 1.8e-09 65.9 82 47.6
MD12G1215100 Malus domestica HOM05D000359 ORTHO05D000251 1.8e-09 65.9 50 66.0
TWI56G0619 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 1.8e-09 65.9 49 69.4
Cpa.g.sc48.85 Carica papaya HOM05D000359 ORTHO05D000251 2.4e-09 65.5 54 63.0
MD04G1201400 Malus domestica HOM05D000359 ORTHO05D000251 2.4e-09 65.5 50 66.0
Atru.chr2.22 Acer truncatum HOM05D000359 ORTHO05D000251 3.1e-09 65.1 50 66.0
COL.COLO4_10508 Corchorus olitorius HOM05D000359 ORTHO05D000251 3.1e-09 65.1 49 71.4
RcHm_v2.0_Chr3g0455601 Rosa chinensis HOM05D000359 ORTHO05D000251 3.1e-09 65.1 53 62.3
Gohir.A13G108800 Gossypium hirsutum HOM05D000359 ORTHO05D000251 5.4e-09 64.3 82 46.3
Gohir.D13G111700 Gossypium hirsutum HOM05D000359 ORTHO05D000251 5.4e-09 64.3 82 46.3
AUR62005193 Chenopodium quinoa HOM05D000359 ORTHO05D000251 7.0e-09 63.9 58 56.9
Dinv30795 Davidia involucrata HOM05D000062 ORTHO05D000043 7.0e-09 63.9 49 67.3
Manes.09G169600 Manihot esculenta HOM05D000359 ORTHO05D000251 7.0e-09 63.9 54 59.3
Sed0024959 Sechium edule HOM05D000359 ORTHO05D000251 7.0e-09 63.9 54 57.4
THA.LOC104821720 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 7.0e-09 63.9 64 53.1
CSS0036018 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 9.2e-09 63.5 53 64.2
CSS0042792 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 9.2e-09 63.5 53 64.2
Cfa006621 Carpinus fangiana HOM05D000359 ORTHO05D000251 9.2e-09 63.5 49 67.3
AUR62000776 Chenopodium quinoa HOM05D000359 ORTHO05D000251 9.2e-09 63.5 58 56.9
Ca_10125_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 9.2e-09 63.5 46 67.4
Haze_04151 Corylus avellana HOM05D000359 ORTHO05D000251 9.2e-09 63.5 49 67.3
FAN05G2358 Fragaria x ananassa HOM05D000359 ORTHO05D000251 9.2e-09 63.5 53 62.3
Glyma.10G152300 Glycine max HOM05D000359 ORTHO05D000251 9.2e-09 63.5 49 65.3
Medtr1g083260 Medicago truncatula HOM05D000359 ORTHO05D000251 9.2e-09 63.5 46 69.6
TPR.G6066 Trifolium pratense HOM05D000359 ORTHO05D000251 9.2e-09 63.5 46 69.6
Sabra05G0031700 Salix brachista HOM05D000359 ORTHO05D007179 1.2e-08 63.2 53 62.3
ClCG03G017080 Citrullus lanatus HOM05D000359 ORTHO05D000251 1.6e-08 62.8 55 52.7
Cc02_g33180 Coffea canephora HOM05D000359 ORTHO05D000251 1.6e-08 62.8 49 65.3
Dinv40320 Davidia involucrata HOM05D000359 ORTHO05D000251 1.6e-08 62.8 54 61.1
Oeu043367.1 Olea europaea HOM05D000359 ORTHO05D000251 1.6e-08 62.8 57 61.4
VMungo0720G2293 Vigna mungo HOM05D000359 ORTHO05D000251 1.6e-08 62.8 49 65.3
FvH4_6g06480 Fragaria vesca HOM05D000359 ORTHO05D000251 2.0e-08 62.4 54 59.3
FAN14G3380 Fragaria x ananassa HOM05D000359 ORTHO05D000251 2.0e-08 62.4 54 59.3
Lj5g0026456 Lotus japonicus HOM05D000359 ORTHO05D000251 2.0e-08 62.4 46 69.6
Nn3g21427 Nelumbo nucifera HOM05D000359 ORTHO05D000251 2.0e-08 62.4 50 64.0
Phvul.007G196700 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 2.0e-08 62.4 46 67.4
SalBow3G3668 Salvia bowleyana HOM05D000359 ORTHO05D000251 2.0e-08 62.4 47 66.0
Ah.06g189720 Amaranthus hybridus HOM05D000062 ORTHO05D000043 2.7e-08 62.0 58 55.2
FAN02G2453 Fragaria x ananassa HOM05D000359 ORTHO05D000251 2.7e-08 62.0 53 60.4
MBI12_g23288_MAGBIO Magnolia biondii HOM05D000359 ORTHO05D000251 2.7e-08 62.0 50 66.0
Oeu023735.1 Olea europaea HOM05D000359 ORTHO05D000251 2.7e-08 62.0 60 56.7
Phvul.006G090300 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 3.5e-08 61.6 46 69.6
Nitab4.5_0003658g0010 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.5e-08 61.2 54 53.7
Nitab4.5_0004891g0050 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.5e-08 61.2 54 53.7
Rhsim07G0187300 Rhododendron simsii HOM05D000359 ORTHO05D000251 4.5e-08 61.2 51 60.8
FAN09G2781 Fragaria x ananassa HOM05D000359 ORTHO05D000251 5.9e-08 60.8 53 58.5
arahy.Tifrunner.gnm1.ann1.EI642X Arachis hypogaea HOM05D000359 ORTHO05D000251 7.8e-08 60.5 49 63.3
arahy.Tifrunner.gnm1.ann1.T1S75H Arachis hypogaea HOM05D000359 ORTHO05D000251 7.8e-08 60.5 49 63.3
DCAR_022145 Daucus carota HOM05D000359 ORTHO05D000251 7.8e-08 60.5 54 53.7
Glyma.20G236100 Glycine max HOM05D000359 ORTHO05D000251 7.8e-08 60.5 49 63.3
TAR636G0320 Trochodendron aralioides HOM05D000359 ORTHO05D000251 7.8e-08 60.5 54 57.4
Hma1.2p1_0307F.1_g120000 Hydrangea macrophylla HOM05D000359 ORTHO05D000251 1.0e-07 60.1 53 60.4
vmacro04961 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.0e-07 60.1 51 60.8
EL10Ac4g09928 Beta vulgaris HOM05D000359 ORTHO05D000251 1.3e-07 59.7 54 53.7
CSS0017953 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 1.3e-07 59.7 49 63.3
CANSAT54G0554 Cannabis sativa HOM05D000359 ORTHO05D000251 1.3e-07 59.7 49 63.3
Peaxi162Scf00037g01115 Petunia axillaris HOM05D000359 ORTHO05D000251 1.3e-07 59.7 51 54.9
Sc16g0008590 Simmondsia chinensis HOM05D000359 ORTHO05D000251 1.7e-07 59.3 49 61.2
CAN.G1459.5 Capsicum annuum HOM05D000359 ORTHO05D000251 2.3e-07 58.9 53 52.8
CsaV3_1G038870 Cucumis sativus L. HOM05D000359 ORTHO05D000251 2.3e-07 58.9 54 51.9
Lsat_1_v5_gn_9_124320 Lactuca sativa HOM05D000359 ORTHO05D000251 2.3e-07 58.9 49 59.2
MSTRG.27976 Avicennia marina HOM05D000359 ORTHO05D000251 2.9e-07 58.5 46 63.0
MELO3C015313.2 Cucumis melo HOM05D000359 ORTHO05D000251 2.9e-07 58.5 50 56.0
QL03p011614 Quercus lobata HOM05D000359 ORTHO05D000251 2.9e-07 58.5 49 61.2
QL03p021659 Quercus lobata HOM05D000359 ORTHO05D000251 2.9e-07 58.5 49 61.2
Glyma.19G234000 Glycine max HOM05D000359 ORTHO05D000251 3.9e-07 58.2 50 56.0
Aqoxy5G00710 Aquilegia oxysepala HOM05D000359 ORTHO05D000251 8.6e-07 57.0 49 57.1
Solyc01g099650.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 1.1e-06 56.6 53 52.8
Sopen01g043160 Solanum pennellii HOM05D000359 ORTHO05D000251 1.1e-06 56.6 53 52.8
PGSC0003DMG400024706 Solanum tuberosum HOM05D000359 ORTHO05D000251 1.1e-06 56.6 53 52.8
VMungo0540G0686 Vigna mungo HOM05D000359 ORTHO05D000251 1.1e-06 56.6 46 65.2
Migut.N02076 Erythranthe guttata HOM05D000359 ORTHO05D000251 1.5e-06 56.2 64 46.9
Migut.O00840 Erythranthe guttata HOM05D000359 ORTHO05D000251 1.5e-06 56.2 64 46.9
PSO832G0361 Papaver somniferum HOM05D000359 ORTHO05D000251 1.5e-06 56.2 50 58.0
DCAR_003350 Daucus carota HOM05D000359 ORTHO05D000251 3.3e-06 55.1 47 57.4
Glyma.03G236400 Glycine max HOM05D000359 ORTHO05D000251 3.3e-06 55.1 46 58.7
HanXRQChr03g0072521 Helianthus annuus HOM05D000359 ORTHO05D000251 3.3e-06 55.1 49 55.1
ECA240G1255 Erigeron canadensis HOM05D000359 ORTHO05D000251 5.6e-06 54.3 49 55.1
PSO210G6642 Papaver somniferum HOM05D000359 ORTHO05D000251 9.5e-06 53.5 50 56.0
SEGI_07623 Sequoiadendron giganteum HOM05D000359 ORTHO05D000251 9.5e-06 53.5 51 49.0
unitig_749.g13559 Utricularia gibba HOM05D000359 ORTHO05D000251 9.5e-06 53.5 51 49.0


User provided reference genes

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