Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.0e-117 427.2 287 100.0
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 2.3e-77 293.1 288 71.9
AT1G58070 Arabidopsis thaliana HOM05D012662 ORTHO05D008751 5.5e-71 271.9 288 67.0
CARHR053990 Cardamine hirsuta HOM05D012662 ORTHO05D008751 9.0e-66 254.6 287 63.8
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 1.2e-62 244.2 287 54.0
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 3.6e-54 216.1 287 50.5
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 5.1e-53 212.2 277 58.1
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 1.8e-50 203.8 256 52.7
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 8.8e-45 184.9 287 45.6
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 8.8e-45 184.9 287 45.6
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 8.8e-45 184.9 287 45.6
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 8.8e-45 184.9 288 45.8
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 1.1e-42 177.9 231 51.1
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 1.1e-42 177.9 231 51.1
Thhalv10023811m.g Eutrema salsugineum HOM05D012662 ORTHO05D008751 1.0e-37 161.4 179 58.1
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 4.2e-31 139.4 127 68.5
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 4.2e-31 139.4 127 68.5
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.7e-30 136.0 277 38.6
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 5.2e-29 132.5 277 39.0
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.2e-29 132.5 274 40.1
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 6.8e-29 132.1 273 38.5
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 6.8e-29 132.1 273 38.5
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 1.2e-28 131.3 265 40.0
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 2.6e-28 130.2 256 40.6
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 3.4e-28 129.8 279 36.9
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 7.5e-28 128.6 270 38.1
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.2e-27 127.1 259 38.6
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 2.8e-27 126.7 268 37.3
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 1.4e-26 124.4 297 35.0
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 3.1e-26 123.2 270 37.0
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.1e-26 123.2 273 37.0
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 4.1e-26 122.9 272 36.4
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 5.4e-26 122.5 262 37.4
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 5.4e-26 122.5 265 38.1
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 9.1e-26 121.7 280 36.4
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 9.1e-26 121.7 300 36.3
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 1.6e-25 120.9 280 38.6
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 7.7e-25 118.6 267 36.3
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 7.7e-25 118.6 280 36.4
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 7.7e-25 118.6 268 36.2
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 1.0e-24 118.2 270 35.9
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.9e-24 116.7 289 36.7
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 3.8e-24 116.3 282 35.8
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 5.0e-24 115.9 278 35.6
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 8.6e-24 115.2 274 36.9
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 8.6e-24 115.2 278 36.7
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 8.6e-24 115.2 278 36.3
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.1e-23 114.8 269 35.7
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 1.9e-23 114.0 275 41.8
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.9e-23 114.0 269 34.9
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.5e-23 113.6 260 36.5
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.5e-23 113.6 276 36.2
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.5e-23 113.6 276 36.2
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.3e-23 113.2 285 35.8
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 5.5e-23 112.5 283 37.1
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 1.6e-22 110.9 149 51.0
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 2.8e-22 110.2 256 37.9
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 2.8e-22 110.2 253 42.7
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 3.6e-22 109.8 272 42.6
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 4.7e-22 109.4 267 47.9
BcaC07g37418 Brassica carinata HOM05D012662 ORTHO05D008751 4.0e-21 106.3 105 60.0
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 5.2e-21 105.9 302 32.8
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 8.9e-21 105.1 234 37.2
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.6e-20 103.6 265 36.6
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 2.6e-20 103.6 268 36.2
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 4.4e-20 102.8 262 34.7
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 5.7e-20 102.4 293 37.5
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 7.5e-20 102.1 220 38.2
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.7e-19 100.9 183 41.5
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 1.7e-19 100.9 297 36.4
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 2.2e-19 100.5 279 33.3
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.8e-19 100.1 270 35.6
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.4e-18 97.8 203 38.4
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 5.4e-18 95.9 274 34.3
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 5.4e-18 95.9 291 32.0
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 7.0e-18 95.5 152 40.8
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 3.5e-17 93.2 258 33.7
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 7.8e-17 92.0 127 52.8
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.3e-16 91.3 267 35.2
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 1.3e-16 91.3 280 32.5
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.3e-16 90.5 267 34.5
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 2.9e-16 90.1 172 40.7
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 6.6e-16 89.0 279 30.1
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 3.3e-15 86.7 178 42.7
BolC4t24104H Brassica oleracea HOM05D012662 ORTHO05D008751 1.6e-14 84.3 59 67.8
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 4.7e-14 82.8 276 32.6
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 8.0e-14 82.0 283 33.2
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 1.4e-13 81.3 260 33.5
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 5.8e-12 75.9 95 51.6
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.3e-11 74.7 269 33.8
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 2.2e-11 73.9 232 32.3
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 2.2e-11 73.9 162 39.5
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 3.2e-10 70.1 139 44.6
BcaB05g22043 Brassica carinata HOM05D007616 ORTHO05D008751 9.2e-10 68.6 86 59.3
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 3.5e-09 66.6 271 29.9
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 4.6e-09 66.2 286 30.4
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 6.0e-09 65.9 104 49.0
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.0e-08 62.8 278 29.1
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.1e-07 61.6 266 27.8
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.9e-07 60.8 265 27.5
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 1.9e-07 60.8 110 43.6
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 1.9e-07 60.8 283 36.0


User provided reference genes

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