Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 0.0e+00 1164.1 591 100.0
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 2.0e-78 297.7 170 83.5
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 2.4e-71 274.2 462 39.0
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 3.9e-69 266.9 507 37.3
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.0e-34 150.6 298 34.2
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 4.5e-33 147.1 219 39.3
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 2.9e-32 144.4 207 40.1
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 8.4e-32 142.9 237 35.4
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 1.9e-31 141.7 211 39.8
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 5.5e-31 140.2 203 39.9
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 7.9e-30 136.3 195 39.0
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 1.0e-29 136.0 204 39.7
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 8.7e-29 132.9 250 35.2
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 8.7e-29 132.9 206 37.9
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 8.7e-29 132.9 162 42.0
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 9.6e-28 129.4 200 36.0
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 2.8e-27 127.9 281 31.3
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.7e-27 127.5 268 32.1
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 4.8e-27 127.1 213 36.6
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 1.4e-26 125.6 141 44.0
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 4.0e-26 124.0 207 34.8
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 4.0e-26 124.0 211 34.6
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 9.0e-26 122.9 207 33.3
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-25 122.1 274 31.0
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-25 122.1 207 35.3
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 2.6e-25 121.3 305 30.2
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-25 120.9 209 33.5
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-25 120.9 197 37.1
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.5e-25 120.6 138 42.0
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 1.3e-24 119.0 303 29.0
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 2.2e-24 118.2 289 29.8
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 2.2e-24 118.2 217 34.6
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 6.5e-24 116.7 206 33.0
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 6.5e-24 116.7 164 37.2
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 6.5e-24 116.7 164 37.2
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 1.1e-23 115.9 221 33.5
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 3.2e-23 114.4 176 38.1
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.2e-23 114.4 243 30.9
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 9.3e-23 112.8 175 36.0
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.2e-22 112.5 280 30.7
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 4.6e-22 110.5 281 29.5
THA.LOC104803192 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.0e-22 110.2 239 33.1
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 7.9e-22 109.8 175 36.0
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 1.0e-21 109.4 215 33.5
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 1.0e-21 109.4 175 35.4
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 1.3e-21 109.0 205 35.1
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 3.9e-21 107.5 232 33.6
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-20 105.5 147 38.1
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 3.3e-20 104.4 148 38.5
THA.LOC104807874 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 7.4e-20 103.2 177 35.6
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 1.3e-19 102.4 140 37.9
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.6e-19 102.1 178 34.3
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 2.1e-19 101.7 148 37.8
THA.LOC104811336 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.8e-19 101.3 186 34.9
THA.LOC109116427 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.2e-19 99.8 194 33.0
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 1.8e-18 98.6 175 33.1
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 4.1e-18 97.4 147 37.4
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 6.9e-18 96.7 131 37.4
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 9.0e-18 96.3 143 35.7
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.5e-17 95.5 135 34.8
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-17 95.5 198 31.8
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 3.4e-17 94.4 201 29.4
THA.LOC109117170 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.4e-17 94.4 230 30.0
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 7.6e-17 93.2 152 38.2
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 1.3e-16 92.4 279 30.1
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 2.2e-16 91.7 224 30.4
THA.LOC104799670 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-16 91.7 155 33.5
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 3.8e-16 90.9 202 30.7
THA.LOC104821166 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.5e-16 89.7 164 32.3
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 1.1e-15 89.4 267 29.6
THA.LOC109116752 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.1e-15 89.4 239 26.4
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 1.4e-15 89.0 131 42.7
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.2e-15 87.8 236 28.8
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 9.3e-15 86.3 244 29.5
THA.LOC104807864 Tarenaya hassleriana HOM05D003554 ORTHO05D015748 9.3e-15 86.3 236 27.1
THA.LOC104809668 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.2e-14 85.9 204 30.9
THA.LOC104823081 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.2e-14 85.9 156 35.9
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 1.6e-14 85.5 205 26.3
THA.LOC104825259 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.6e-14 85.5 209 30.1
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 3.6e-14 84.3 166 36.1
THA.LOC104820187 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.6e-14 84.3 171 31.6
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 4.6e-14 84.0 276 26.8
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 4.6e-14 84.0 188 34.6
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.1e-14 83.6 239 30.1
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.9e-14 83.2 149 32.9
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 7.9e-14 83.2 92 43.5
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 1.0e-13 82.8 118 39.8
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 1.0e-13 82.8 126 38.9
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 2.3e-13 81.6 91 45.1
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 3.0e-13 81.3 118 39.0
THA.LOC104810514 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.0e-13 81.3 194 29.9
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.9e-13 80.9 256 29.3
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 5.1e-13 80.5 253 26.1
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 5.1e-13 80.5 92 42.4
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 5.1e-13 80.5 92 42.4
A07p06510 Brassica napus HOM05D003554 ORTHO05D005130 6.7e-13 80.1 92 41.3
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 6.7e-13 80.1 128 39.1
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 1.5e-12 79.0 201 29.4
THA.LOC104807807 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.5e-12 79.0 120 34.2
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 1.9e-12 78.6 127 38.6
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 3.3e-12 77.8 103 38.8
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 3.3e-12 77.8 128 35.2
THA.LOC104798881 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 7.4e-12 76.6 115 34.8
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 2.2e-11 75.1 81 39.5
THA.LOC104800374 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.2e-11 73.2 179 30.2
THA.LOC109116460 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 1.1e-10 72.8 157 33.8
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.4e-10 72.4 143 35.7
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 6.9e-10 70.1 184 29.9
THA.LOC109116278 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.9e-10 70.1 194 29.4
Aa31LG6G9990 Aethionema arabicum HOM05D003554 ORTHO05D005130 9.1e-10 69.7 126 31.7
BcaC07g39489 Brassica carinata HOM05D009532 ORTHO05D013511 2.0e-09 68.6 116 41.4
THA.LOC104798704 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.0e-09 68.6 94 37.2
C08p06800 Brassica napus HOM05D003554 ORTHO05D005130 2.6e-09 68.2 81 38.3
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 3.4e-09 67.8 81 38.3
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 5.9e-09 67.0 100 38.0
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.3e-08 65.9 127 38.6
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 2.2e-08 65.1 163 31.9
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 2.9e-08 64.7 110 36.4
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 5.0e-08 63.9 76 40.8
THA.LOC104798651 Tarenaya hassleriana HOM05D003554 ORTHO05D015748 5.0e-08 63.9 113 38.1
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 2.5e-07 61.6 106 35.8
BolC3t18729H Brassica oleracea HOM05D004128 ORTHO05D008395 2.5e-07 61.6 88 37.5
Thhalv10023867m.g Eutrema salsugineum HOM05D000254 ORTHO05D000165 2.5e-07 61.6 56 48.2
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 5.5e-07 60.5 58 48.3
Sp7g04330 Schrenkiella parvula HOM05D003554 ORTHO05D032345 7.2e-07 60.1 84 38.1
Nitab4.5_0003947g0010 Nicotiana tabacum HOM05D008646 ORTHO05D010739 9.4e-07 59.7 122 32.8
BcaB04g17553 Brassica carinata HOM05D008316 ORTHO05D014956 1.2e-06 59.3 72 43.1
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 1.2e-06 59.3 174 29.3
Aa31sc471G30 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.7e-06 58.2 116 30.2
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 2.7e-06 58.2 182 30.8
BolC4t27914H Brassica oleracea HOM05D008062 ORTHO05D008395 2.7e-06 58.2 89 36.0
Nitab4.5_0001456g0160 Nicotiana tabacum HOM05D008646 ORTHO05D010739 2.7e-06 58.2 65 35.4
THA.LOC104822529 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.7e-06 58.2 62 38.7
BcaB06g28000 Brassica carinata HOM05D009532 ORTHO05D005130 4.6e-06 57.4 58 43.1
THA.LOC104804766 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 6.1e-06 57.0 62 38.7
BcaB05g25144 Brassica carinata HOM05D008316 ORTHO05D005130 7.9e-06 56.6 124 29.8
BcaC09g49342 Brassica carinata HOM05D008316 ORTHO05D005130 7.9e-06 56.6 124 29.8


User provided reference genes

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