Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.7e-27 124.0 57 100.0
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.0e-25 118.2 56 94.6
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.6e-25 117.9 56 94.6
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.5e-25 117.1 56 92.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.8e-25 116.7 56 92.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.0e-24 115.9 56 91.1
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-24 114.8 56 89.3
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-24 114.8 56 89.3
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-24 114.0 56 87.5
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 4.9e-24 113.6 56 87.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-24 113.6 56 87.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.9e-24 113.6 56 87.5
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 6.5e-24 113.2 56 89.3
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-23 112.5 56 87.5
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-23 111.7 56 87.5
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.9e-23 111.7 56 87.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-23 110.9 56 85.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-22 108.2 56 85.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-22 108.2 56 85.7
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-22 108.2 56 85.7
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-22 108.2 57 84.2
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.6e-22 107.1 57 84.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.0e-21 105.9 56 83.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-21 103.6 56 82.1
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-18 94.4 54 75.9
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-18 94.4 54 75.9
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.1e-18 94.4 54 75.9
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.1e-18 94.0 54 75.9
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-18 94.0 54 75.9
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-18 94.0 54 75.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.3e-18 93.6 56 73.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 6.9e-18 93.2 56 69.6
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-18 93.2 54 74.1
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.2e-17 92.4 56 73.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-17 92.4 54 74.1
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.2e-17 92.4 52 76.9
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.5e-17 92.0 56 71.4
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 2.0e-17 91.7 56 73.2
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.6e-17 91.3 54 72.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.6e-17 91.3 56 71.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.4e-17 90.9 56 69.6
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 4.5e-17 90.5 52 75.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.9e-17 90.1 54 72.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-17 89.7 48 81.2
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.3e-16 89.0 56 69.6
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.3e-16 89.0 56 69.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-16 89.0 56 69.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-16 88.6 56 69.6
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.2e-16 88.2 56 69.6
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-16 88.2 54 70.4
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.2e-16 88.2 56 67.9
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.9e-16 87.8 56 67.9
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.8e-16 87.4 56 71.4
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.0e-16 87.0 56 66.1
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 6.5e-16 86.7 56 67.9
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 6.5e-16 86.7 56 66.1
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 6.5e-16 86.7 56 66.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 8.5e-16 86.3 56 64.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.1e-15 85.9 56 66.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.1e-15 85.9 56 66.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.1e-15 85.9 56 62.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.1e-15 85.9 52 71.2
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.4e-15 85.5 56 64.3
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-15 85.1 56 64.3
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.5e-15 84.7 54 68.5
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.5e-15 84.7 56 62.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.5e-15 84.7 56 67.9
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.5e-15 84.7 56 62.5
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.2e-15 84.3 56 66.1
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 3.2e-15 84.3 56 66.1
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.2e-15 84.3 56 64.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 3.2e-15 84.3 56 66.1
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 3.2e-15 84.3 56 66.1
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.2e-15 84.3 54 66.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 4.2e-15 84.0 56 64.3
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 4.2e-15 84.0 56 66.1
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 4.2e-15 84.0 54 66.7
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 4.2e-15 84.0 54 66.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 5.5e-15 83.6 54 63.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.5e-15 83.6 54 66.7
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 5.5e-15 83.6 56 67.9
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 7.2e-15 83.2 54 66.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 7.2e-15 83.2 56 64.3
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.2e-15 83.2 56 64.3
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 9.3e-15 82.8 56 62.5
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.3e-15 82.8 56 60.7
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 9.3e-15 82.8 54 64.8
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 9.3e-15 82.8 56 60.7
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.2e-14 82.4 56 62.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.1e-14 81.6 56 66.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.1e-14 81.6 56 62.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.1e-14 81.6 56 58.9
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.1e-14 81.6 56 62.5
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.7e-14 81.3 56 62.5
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.7e-14 81.3 56 64.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.7e-14 81.3 56 62.5
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.7e-14 81.3 56 60.7
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.7e-14 81.3 56 62.5
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.7e-14 81.3 56 60.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 4.6e-14 80.5 56 60.7
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 6.1e-14 80.1 56 62.5
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 7.9e-14 79.7 56 62.5
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-13 79.3 54 61.1
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-13 79.3 54 61.1
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.4e-13 79.0 56 57.1
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.4e-13 79.0 56 60.7
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.4e-13 79.0 56 64.3
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.4e-13 79.0 53 60.4
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-13 79.0 56 60.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-13 79.0 56 60.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.3e-13 78.2 56 57.1
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.0e-13 77.8 56 58.9
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 3.0e-13 77.8 56 60.7
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.9e-13 77.4 41 82.9
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.9e-13 77.4 56 60.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 5.1e-13 77.0 56 60.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 5.1e-13 77.0 60 56.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.1e-13 77.0 56 58.9
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 6.7e-13 76.6 56 57.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 6.7e-13 76.6 56 60.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-12 75.5 56 58.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.5e-12 75.5 56 55.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-12 75.1 49 63.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.8e-11 71.2 56 60.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 3.1e-10 67.8 56 53.6
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.0e-08 62.8 101 37.6
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.2e-07 57.8 32 75.0
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 9.4e-07 56.2 32 71.9
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 9.4e-07 56.2 32 71.9
AL6G48120 Arabidopsis lyrata HOM05D040309 ORTHO05D031303 9.4e-07 56.2 29 86.2
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.7e-06 54.7 56 41.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.6e-06 54.3 32 68.8


User provided reference genes

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