Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 6.3e-165 583.9 279 100.0
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 3.2e-132 475.3 316 74.4
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 6.9e-119 431.0 317 67.2
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 2.3e-114 416.0 314 67.8
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 2.1e-112 409.5 319 66.1
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 1.6e-107 393.3 293 67.2
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 3.0e-106 389.0 312 63.8
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.0e-102 376.3 304 63.8
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 5.5e-100 368.2 321 58.6
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 1.8e-98 363.2 316 58.2
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 4.5e-94 348.6 312 56.7
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 6.0e-91 338.2 339 55.2
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.6e-88 330.1 325 55.4
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 1.2e-86 323.9 319 53.3
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 1.1e-81 307.4 320 50.6
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 3.7e-80 302.4 318 51.9
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.1e-75 286.6 310 49.4
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 1.4e-71 273.9 319 48.3
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 3.1e-71 272.7 319 48.3
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 3.4e-70 269.2 311 46.3
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 3.4e-70 269.2 311 46.3
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 4.5e-70 268.9 319 47.6
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 5.9e-70 268.5 311 45.7
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 7.7e-70 268.1 317 48.3
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 2.2e-69 266.5 319 48.6
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 3.8e-69 265.8 316 44.9
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 1.1e-68 264.2 319 48.3
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 1.4e-68 263.8 319 48.0
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 1.9e-68 263.5 319 48.3
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 2.5e-68 263.1 308 47.1
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 2.5e-68 263.1 317 47.3
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 3.6e-67 259.2 316 44.3
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 5.2e-66 255.4 318 49.4
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 3.3e-65 252.7 312 44.6
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 7.4e-65 251.5 321 48.3
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 7.4e-65 251.5 321 48.3
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 7.0e-63 245.0 309 44.0
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 1.2e-59 234.2 254 46.5
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 3.1e-55 219.5 232 51.3
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 1.1e-52 211.1 277 43.0
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 8.0e-51 204.9 342 38.3
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 3.1e-47 193.0 312 41.3
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 5.4e-47 192.2 247 43.3
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 2.7e-46 189.9 316 36.4
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.1e-36 157.9 386 32.6
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 9.5e-36 154.8 145 59.3
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 1.6e-35 154.1 280 36.1
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 1.6e-35 154.1 280 36.1
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 4.4e-33 146.0 138 55.8
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 1.2e-30 137.9 163 47.2
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 8.0e-27 125.2 149 47.7
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 5.2e-26 122.5 119 57.1
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 4.4e-25 119.4 152 44.7
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 5.8e-25 119.0 144 43.8
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 7.5e-25 118.6 152 44.1
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 9.8e-25 118.2 154 42.2
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 2.2e-24 117.1 256 33.2
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 2.9e-24 116.7 152 42.8
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 2.9e-24 116.7 152 42.8
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 6.4e-24 115.5 155 41.9
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 8.3e-24 115.2 129 51.9
Sp2g04350 Schrenkiella parvula HOM05D007901 ORTHO05D010902 8.3e-24 115.2 196 37.2
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 1.1e-23 114.8 82 69.5
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 2.4e-23 113.6 153 45.1
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 4.1e-23 112.8 123 53.7
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 5.4e-23 112.5 123 52.8
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 3.9e-21 106.3 140 40.7
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 4.4e-17 92.8 134 40.3
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 1.3e-16 91.3 132 40.2
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.9e-15 87.4 100 46.0
C09p31720 Brassica napus HOM05D007901 ORTHO05D024420 2.4e-15 87.0 226 29.6
C09p31750 Brassica napus HOM05D007901 ORTHO05D024420 2.4e-15 87.0 226 29.6
BolC9t56032H Brassica oleracea HOM05D007901 ORTHO05D024420 2.4e-15 87.0 226 29.6
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 1.6e-14 84.3 114 39.5
Sp2g04410 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.7e-14 83.6 59 64.4
BcaC04g21443 Brassica carinata HOM05D007901 ORTHO05D024420 2.3e-13 80.5 226 28.8
BolC9t56027H Brassica oleracea HOM05D007901 ORTHO05D024420 1.1e-12 78.2 220 28.6
CSS0020310 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D001550 1.5e-09 67.8 119 36.1
HPP92_022887 Vanilla planifolia HOM05D000010 ORTHO05D000151 1.9e-07 60.8 119 34.5
Os06g0101800 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D049792 3.2e-07 60.1 123 32.5
Actinidia05873 Actinidia chinensis HOM05D000010 ORTHO05D001550 1.2e-06 58.2 113 31.0
Lj2A110T59 Lonicera japonica HOM05D000010 ORTHO05D000151 1.2e-06 58.2 164 29.3
CiPaw.02G045800 Carya illinoinensis HOM05D000010 ORTHO05D016909 1.6e-06 57.8 138 29.7
Aa31LG8G2370 Aethionema arabicum HOM05D000010 ORTHO05D000302 2.1e-06 57.4 91 34.1
BraA02t06130Z Brassica rapa HOM05D000010 ORTHO05D000302 2.1e-06 57.4 150 28.7
Oeu036311.1 Olea europaea HOM05D000010 ORTHO05D003408 2.1e-06 57.4 133 30.1
CARHR090150 Cardamine hirsuta HOM05D000010 ORTHO05D000302 3.5e-06 56.6 82 37.8
Lalb_Chr21g0316841 Lupinus albus HOM05D000010 ORTHO05D001550 4.6e-06 56.2 118 27.1
BcaC03g14365 Brassica carinata HOM05D000010 ORTHO05D000302 6.0e-06 55.8 150 28.0
A02p10670 Brassica napus HOM05D000010 ORTHO05D000302 6.0e-06 55.8 150 28.0
C02p17800 Brassica napus HOM05D000010 ORTHO05D000302 6.0e-06 55.8 150 28.0
BolC2t07909H Brassica oleracea HOM05D000010 ORTHO05D000302 6.0e-06 55.8 150 28.0
Ciclev10016434m.g Citrus clementina HOM05D000010 ORTHO05D001550 6.0e-06 55.8 119 31.9


User provided reference genes

Program Settings