Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 9.3e-98 360.1 175 100.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.9e-96 354.8 175 97.7
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 5.1e-96 354.4 175 97.1
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.5e-95 352.8 175 97.1
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.6e-94 349.4 174 96.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 6.2e-94 347.4 175 95.4
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 6.2e-94 347.4 175 95.4
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.8e-93 345.9 174 94.8
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.4e-93 345.5 175 95.4
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.4e-93 345.5 174 95.4
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 5.3e-93 344.4 174 94.8
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 9.0e-93 343.6 174 94.8
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.9e-90 335.9 173 89.6
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.9e-90 335.9 174 92.5
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 2.1e-89 332.4 173 89.0
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.7e-89 332.0 173 89.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.6e-89 331.3 173 88.4
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.0e-88 330.1 173 88.4
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.0e-88 330.1 173 89.6
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.8e-88 329.3 173 89.0
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.8e-88 329.3 172 89.5
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 86.7
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 6.7e-88 327.4 172 88.4
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 6.7e-88 327.4 173 86.7
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 88.4
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 88.4
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.1e-87 326.6 173 88.4
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.1e-87 326.6 173 86.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 87.8
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.5e-87 326.2 175 88.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.5e-87 325.5 173 89.0
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 87.4
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 2.5e-87 325.5 173 87.9
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 85.5
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 85.7
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.3e-87 324.7 173 88.4
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.3e-87 324.7 173 87.3
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 88.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 7.4e-87 323.9 172 88.4
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 9.7e-87 323.6 173 86.1
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 9.7e-87 323.6 173 86.7
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 86.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 2.8e-86 322.0 175 85.7
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 87.9
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 87.9
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 87.9
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 86.7
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 88.4
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 87.2
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 85.1
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 86.6
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 89.0
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 6.3e-86 320.9 173 86.7
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 87.2
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 175 85.1
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 86.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 84.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.4e-85 319.7 173 85.5
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.4e-85 319.7 173 86.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.8e-85 319.3 175 85.7
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.8e-85 319.3 173 85.0
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 87.3
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 87.3
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 87.3
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 86.6
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.3e-85 317.8 173 87.3
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.3e-85 317.8 173 86.1
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 84.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 6.9e-85 317.4 174 83.9
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.6e-84 315.5 173 85.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 84.6
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.9e-84 314.3 173 83.8
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 5.9e-84 314.3 172 86.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 7.7e-84 313.9 173 86.1
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 7.7e-84 313.9 173 83.8
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 7.7e-84 313.9 172 85.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.3e-83 313.2 173 85.0
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.7e-83 312.8 173 84.4
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 82.9
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 83.3
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 83.3
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 83.3
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 83.3
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 3.2e-82 308.5 174 82.8
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 5.5e-82 307.8 173 82.7
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.2e-81 306.6 173 82.7
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.6e-81 306.2 188 78.2
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.1e-81 305.8 173 83.8
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.7e-81 305.4 224 68.3
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 4.6e-81 304.7 171 85.4
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.6e-81 304.7 174 80.5
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.0e-80 303.5 174 79.9
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.0e-80 303.5 172 82.6
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 3.0e-80 302.0 172 83.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.5e-79 299.7 176 79.5
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.0e-79 299.3 159 89.9
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 8.2e-78 293.9 179 78.8
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.4e-77 293.1 169 81.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.1e-77 291.6 158 88.6
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.5e-76 289.7 153 91.5
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 6.3e-70 267.7 151 83.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.8e-69 266.2 149 85.9
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 5.9e-68 261.2 136 89.7
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.5e-67 257.3 173 67.1
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 9.4e-66 253.8 173 67.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 4.7e-65 251.5 175 68.0
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.0e-65 250.8 173 65.9
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.1e-63 246.9 169 72.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 9.7e-63 243.8 146 80.1
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 4.8e-62 241.5 126 89.7
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.8e-61 239.6 134 85.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 9.1e-61 237.3 127 85.8
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.2e-60 236.9 135 83.0
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 2.6e-60 235.7 127 87.4
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.5e-60 235.3 130 86.2
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 3.5e-60 235.3 130 86.2
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.5e-60 235.3 129 84.5
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 5.9e-60 234.6 130 85.4
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.9e-60 234.6 176 64.8
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.9e-59 232.3 128 85.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.0e-59 231.5 170 67.6
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 8.8e-56 220.7 129 81.4
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-54 216.9 163 69.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.7e-52 209.1 151 70.9
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 8.0e-49 197.6 132 73.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.4e-48 196.8 128 75.8
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.1e-45 185.7 130 70.8
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 6.6e-43 177.9 131 70.2
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.4e-37 160.2 96 81.2
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.4e-37 158.3 92 83.7
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.9e-36 154.8 91 84.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.0e-35 154.1 80 90.0
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-34 149.1 92 81.5
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 4.3e-34 148.7 88 78.4
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.5e-34 147.5 104 73.1
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-33 147.1 95 78.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-33 145.6 90 82.2
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.0e-33 144.4 95 75.8
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.0e-33 144.4 93 75.3
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 5.2e-32 141.7 99 71.7
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.9e-30 136.0 75 86.7
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.4e-29 131.7 80 81.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.9e-26 123.2 192 36.5
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-26 122.9 77 79.2
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.6e-25 120.2 67 79.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.4e-21 107.1 89 61.8
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 7.8e-20 101.3 56 83.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 9.2e-13 77.8 37 83.8


User provided reference genes

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