Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 2.0e-214 748.8 383 100.0
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 2.0e-201 705.7 383 94.3
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 1.7e-181 639.4 384 86.7
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 8.9e-178 627.1 383 85.1
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 2.2e-176 622.5 384 83.3
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 3.3e-172 608.6 385 83.1
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.1e-170 603.6 386 82.4
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 8.4e-168 594.0 386 81.9
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 3.6e-163 578.6 378 81.2
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 6.9e-162 574.3 379 81.3
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 3.7e-147 525.4 382 72.8
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 2.7e-126 456.1 340 68.8
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 8.8e-125 451.1 387 62.0
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 2.6e-124 449.5 303 74.6
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 1.3e-123 447.2 315 72.1
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 1.7e-123 446.8 307 73.6
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 8.2e-123 444.5 304 72.7
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 5.0e-120 435.3 359 64.6
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 5.0e-120 435.3 306 69.6
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 8.5e-120 434.5 304 71.4
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.1e-119 434.1 305 70.5
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.5e-119 433.7 326 70.2
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 1.5e-119 433.7 320 67.5
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 1.9e-119 433.3 312 69.6
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 3.2e-119 432.6 321 67.3
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 9.4e-119 431.0 300 71.3
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 9.4e-119 431.0 304 71.1
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 9.4e-119 431.0 304 71.1
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 1.2e-118 430.6 305 70.8
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.6e-118 430.3 355 64.5
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 2.7e-118 429.5 305 71.1
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 2.7e-118 429.5 310 70.6
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 4.7e-118 428.7 310 71.0
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 8.0e-118 427.9 387 57.9
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.0e-117 427.6 310 68.7
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.8e-117 426.8 317 68.5
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.8e-117 426.8 311 70.7
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 1.8e-117 426.8 326 69.9
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 2.3e-117 426.4 303 70.3
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 2.3e-117 426.4 304 69.4
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.0e-117 426.0 304 70.4
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 4.0e-117 425.6 302 71.5
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 5.2e-117 425.2 332 65.7
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 5.2e-117 425.2 305 70.5
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 6.7e-117 424.9 326 68.4
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 8.8e-117 424.5 332 66.3
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 3.3e-116 422.5 296 70.9
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 4.4e-116 422.2 308 70.5
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 4.4e-116 422.2 328 67.1
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 4.4e-116 422.2 356 64.3
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 9.7e-116 421.0 304 69.1
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 2.2e-115 419.9 305 68.5
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-114 417.5 310 68.4
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.1e-114 417.5 318 66.4
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 1.1e-114 417.5 311 69.5
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 1.4e-114 417.2 361 61.5
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 4.1e-114 415.6 305 68.2
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 9.1e-114 414.5 304 68.1
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 9.1e-114 414.5 360 60.6
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 1.6e-113 413.7 315 66.3
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 1.6e-113 413.7 315 69.5
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 2.0e-113 413.3 340 62.6
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 3.5e-113 412.5 304 67.8
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.5e-113 412.5 305 68.9
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 1.3e-112 410.6 310 69.4
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.3e-112 410.6 315 68.9
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 2.9e-112 409.5 305 70.2
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 3.8e-112 409.1 336 62.2
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 8.5e-112 407.9 304 67.4
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 9.4e-111 404.4 316 64.2
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 2.7e-110 402.9 388 55.2
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 2.7e-110 402.9 390 55.6
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 6.1e-110 401.7 316 65.2
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 1.8e-109 400.2 229 89.5
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.0e-109 399.4 345 60.0
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 4.0e-109 399.1 301 67.8
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 5.2e-109 398.7 306 67.0
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 1.5e-108 397.1 327 63.3
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 9.8e-108 394.4 279 70.6
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.3e-107 394.0 279 69.9
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 5.4e-106 388.7 306 66.0
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 5.0e-104 382.1 304 65.5
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.5e-103 380.6 313 65.2
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 9.4e-103 377.9 304 64.1
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 2.1e-102 376.7 287 68.6
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 2.7e-102 376.3 305 63.9
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 3.6e-102 375.9 300 63.7
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.7e-99 367.1 305 61.0
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 5.0e-96 355.5 308 57.8
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 2.5e-95 353.2 309 59.2
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 4.3e-95 352.4 356 56.7
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 1.2e-94 350.9 349 55.6
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 1.4e-93 347.4 281 64.1
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 1.8e-93 347.1 315 59.7
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 1.5e-92 344.0 304 57.9
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.2e-89 334.3 305 57.7
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 5.0e-88 328.9 285 58.6
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 4.3e-87 325.9 296 57.1
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 4.3e-87 325.9 306 58.2
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 5.6e-87 325.5 241 68.5
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 3.7e-83 312.8 214 72.4
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 2.3e-80 303.5 215 70.7
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 4.6e-73 279.3 230 64.3
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.8e-69 267.3 195 67.7
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 2.3e-69 266.9 212 62.3
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.1e-66 258.1 331 45.3
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 2.4e-66 256.9 315 46.3
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 3.2e-66 256.5 310 48.1
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.6e-63 245.7 278 50.7
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 3.4e-60 236.5 274 48.2
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 3.4e-60 236.5 302 45.4
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 4.8e-54 216.1 173 61.3
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.7e-49 200.3 349 40.4
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 6.6e-48 195.7 277 45.8
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 7.4e-39 165.6 126 65.9
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 5.3e-37 159.5 91 85.7
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 9.6e-31 138.7 104 66.3
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 9.6e-31 138.7 104 66.3
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 9.3e-26 122.1 93 64.5
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 3.6e-25 120.2 107 58.9
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 4.5e-20 103.2 96 56.2
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 4.5e-20 103.2 96 56.2
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 3.8e-19 100.1 96 54.2
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.6e-15 87.4 93 58.1
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.4e-13 81.6 55 67.3
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 3.0e-08 63.9 79 45.6


User provided reference genes

Program Settings