Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 6.9e-70 267.3 148 100.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 89.2
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.8e-60 235.0 148 87.2
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.2e-58 229.9 148 87.2
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.0e-57 226.9 148 85.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.0e-57 224.9 148 84.5
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.0e-57 224.9 148 84.5
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.0e-57 224.9 148 84.5
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 5.2e-57 224.6 148 85.1
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-56 223.0 148 83.8
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.5e-56 223.0 148 83.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 7.5e-56 220.7 148 82.4
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.8e-55 218.8 148 82.4
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 3.3e-43 178.7 148 69.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-39 166.8 148 62.8
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.3e-39 166.8 148 62.8
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-39 166.4 148 62.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 8.3e-39 164.1 148 64.2
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 8.3e-39 164.1 148 63.5
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.4e-38 163.3 148 62.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.1e-38 162.2 148 62.8
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-37 159.5 148 62.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 2.7e-37 159.1 148 63.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 3.5e-37 158.7 148 61.5
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 7.8e-37 157.5 148 60.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 7.8e-37 157.5 148 60.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.7e-36 156.4 148 60.8
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 3.8e-36 155.2 147 59.9
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 6.6e-36 154.5 148 60.8
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.5e-35 152.5 143 60.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.5e-35 152.5 148 58.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 2.5e-35 152.5 148 60.8
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.3e-35 151.8 148 56.8
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 58.1
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 58.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.2e-34 150.2 148 58.1
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.6e-34 149.8 148 58.1
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 57.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 58.8
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 57.4
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 55.4
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.0e-33 147.1 148 59.5
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.8e-33 146.4 148 57.4
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.3e-33 146.0 148 56.1
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 60.1
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.2e-33 144.8 148 56.8
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 8.9e-33 144.1 142 58.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 5.8e-32 141.4 145 53.8
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 7.5e-32 141.0 150 59.3
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.8e-32 140.6 144 58.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 54.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-31 138.7 144 57.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.3e-31 137.5 143 57.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 8.3e-31 137.5 148 56.8
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.4e-30 136.7 148 55.4
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.9e-30 136.3 148 55.4
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.9e-30 136.3 150 55.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.4e-30 136.0 143 55.9
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 5.4e-30 134.8 150 58.0
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 7.0e-30 134.4 143 56.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.5e-29 132.1 148 55.4
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.0e-28 130.6 152 55.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.7e-28 129.8 148 52.7
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 54.3
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.6e-28 127.5 152 54.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 8.6e-28 127.5 151 53.6
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.1e-27 127.1 119 60.5
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.5e-27 126.7 150 54.7
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.5e-27 126.7 137 56.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.5e-27 126.7 150 51.3
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-27 125.9 126 57.9
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.5e-27 125.9 151 53.6
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.3e-27 125.6 150 50.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 7.3e-27 124.4 148 50.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.5e-27 124.0 137 51.1
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.6e-26 123.2 152 48.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 2.1e-26 122.9 142 53.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.6e-26 122.1 123 56.9
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.6e-26 122.1 149 52.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.7e-26 121.7 150 50.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 4.7e-26 121.7 132 56.1
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-25 120.6 149 51.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-25 120.6 149 51.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.4e-25 120.2 155 52.3
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.8e-25 119.8 136 55.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.3e-25 119.4 150 50.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.9e-25 117.5 150 53.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.9e-25 117.5 150 53.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.2e-24 117.1 150 51.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-24 116.7 129 54.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.5e-24 116.7 148 52.0
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.6e-24 115.9 137 50.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.4e-24 115.2 120 57.5
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 5.8e-24 114.8 119 57.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-23 113.6 119 57.1
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-23 113.6 119 57.1
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.7e-23 113.2 148 48.0
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 4.9e-23 111.7 149 49.7
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 6.4e-23 111.3 148 48.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-22 110.5 111 61.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.4e-22 110.2 112 58.9
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.9e-22 109.8 151 45.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.2e-22 107.5 135 50.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.6e-21 106.7 148 47.3
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.6e-21 106.7 118 55.1
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 7.8e-21 104.4 114 55.3
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 7.8e-21 104.4 114 55.3
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.8e-21 104.4 121 53.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.3e-20 103.6 149 48.3
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.7e-20 103.2 136 43.4
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 5.1e-20 101.7 119 51.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.3e-19 99.0 148 47.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.3e-19 97.8 151 45.7
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-18 95.9 125 46.4
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 9.9e-16 87.4 148 43.2
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.1e-14 82.0 75 61.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.2e-13 80.5 148 37.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-13 80.1 79 55.7
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.9e-11 73.2 86 50.0
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 7.3e-11 71.2 57 64.9
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-09 67.4 102 43.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.4e-09 67.0 119 40.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-08 63.9 102 41.2
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.2e-06 55.8 63 54.0
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 4.2e-06 55.5 89 42.7


User provided reference genes

Program Settings