Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 0.0e+00 1135.2 624 100.0
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.1e-310 1069.3 626 93.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 9.4e-310 1066.2 624 95.0
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 6.3e-298 1026.9 633 90.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 9.5e-286 986.5 624 88.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 9.5e-286 986.5 624 88.1
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.2e-285 986.1 619 90.3
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-285 984.9 624 88.0
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.4e-284 982.6 627 88.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.4e-283 978.0 626 87.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.4e-283 978.0 626 87.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 4.9e-282 974.2 624 86.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-274 948.3 624 85.1
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 2.9e-274 948.3 624 85.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.9e-247 858.2 563 85.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 6.2e-245 850.9 590 81.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.1e-244 848.6 616 78.1
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 3.1e-220 768.8 668 67.4
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.9e-218 762.3 673 66.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.1e-217 760.4 667 66.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.1e-217 760.4 667 66.7
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.4e-217 760.0 673 66.3
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.2e-217 758.4 668 66.3
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 9.3e-217 757.3 423 92.2
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 9.3e-217 757.3 669 66.1
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-216 756.9 676 63.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-216 756.9 663 65.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 6.0e-216 754.6 667 66.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.0e-215 753.8 667 66.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.8e-215 753.1 672 65.6
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 3.0e-215 752.3 672 65.3
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.3e-214 748.8 671 65.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 9.7e-214 747.3 664 66.1
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.3e-213 746.9 672 65.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.8e-213 745.7 658 66.3
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.3e-213 744.6 672 65.2
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.8e-212 743.0 505 80.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.2e-211 740.3 694 61.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.0e-211 739.6 673 65.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.7e-211 737.6 635 66.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.7e-211 737.6 672 64.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 7.7e-211 737.6 694 63.4
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.0e-210 737.3 634 67.2
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.0e-210 737.3 635 67.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.4e-209 733.4 660 65.8
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.2e-209 732.3 665 65.9
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.7e-208 729.2 658 64.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.0e-207 727.2 640 66.1
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.5e-206 723.4 682 62.5
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.5e-206 723.4 670 65.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.0e-206 723.0 671 63.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.7e-205 719.9 680 63.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.7e-205 719.9 646 66.4
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.4e-204 716.8 678 63.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.0e-203 713.0 617 67.1
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.0e-203 713.0 686 62.4
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.9e-203 711.4 728 60.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.0e-202 708.4 648 64.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.4e-201 706.8 674 63.2
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.4e-201 706.8 672 63.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 3.2e-201 705.7 651 65.6
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.6e-200 702.2 682 62.2
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.0e-199 700.7 676 62.9
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.8e-199 699.9 551 72.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 6.7e-199 698.0 664 62.2
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.1e-198 697.2 608 66.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 6.3e-197 691.4 626 64.1
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.1e-196 690.6 630 64.4
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 3.1e-196 689.1 647 63.5
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 7.0e-196 688.0 652 64.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 9.1e-196 687.6 669 61.7
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.3e-194 683.7 595 67.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.7e-194 683.3 794 56.9
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.2e-194 682.9 516 72.7
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.9e-194 682.6 687 60.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-193 680.2 613 64.8
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.4e-190 668.7 669 61.4
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.7e-189 666.8 648 61.4
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.8e-189 666.0 679 59.4
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 6.3e-189 664.8 636 62.1
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.1e-188 662.1 634 61.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 5.9e-187 658.3 676 57.7
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.8e-186 655.6 677 58.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 8.5e-186 654.4 677 58.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 8.5e-186 654.4 615 63.9
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.2e-185 652.5 590 65.4
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.5e-185 651.7 514 72.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.8e-180 636.7 732 53.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 5.2e-175 618.6 699 56.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 9.8e-174 614.4 512 68.4
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.6e-168 597.0 664 52.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.2e-166 590.9 516 60.9
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.5e-166 590.5 620 59.7
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.4e-164 583.9 496 69.0
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 5.6e-161 572.0 463 70.8
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 4.4e-158 562.4 663 51.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.1e-156 557.8 679 53.6
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.1e-151 541.2 629 55.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-148 531.2 603 52.6
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 3.2e-148 529.6 680 49.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 3.0e-146 523.1 690 51.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 3.6e-144 516.2 613 54.3
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.6e-144 516.2 613 54.8
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.9e-141 505.8 681 48.8
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.1e-140 502.7 404 71.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.3e-130 471.1 457 63.5
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.6e-123 447.6 529 50.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-122 444.5 724 41.9
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.4e-116 424.5 763 39.8
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.2e-116 423.3 615 44.7
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 7.1e-108 395.6 503 53.3
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-105 388.3 660 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.1e-104 384.0 548 44.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.4e-102 376.7 660 42.0
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 5.5e-100 369.4 542 45.6
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 5.9e-94 349.4 278 67.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 5.9e-94 349.4 309 71.5
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.1e-92 345.1 320 70.6
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.0e-78 297.7 276 71.7
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.3e-71 273.1 285 56.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.7e-67 260.8 180 85.0
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 6.1e-59 233.0 312 52.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-55 221.1 166 74.7
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.4e-50 205.3 186 77.4
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-49 202.2 301 41.9
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.4e-49 200.7 294 50.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 8.9e-42 176.0 103 91.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 4.1e-39 167.2 275 44.0
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 7.0e-39 166.4 224 57.1
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.3e-36 157.5 200 49.0
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 4.0e-34 150.6 91 83.5
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 4.0e-34 150.6 91 83.5
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-32 144.8 81 79.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.8e-30 136.3 288 33.7
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-24 117.1 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.1e-23 114.0 224 36.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-21 109.0 83 78.3
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-19 102.1 167 38.3
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.4e-18 98.2 58 75.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.4e-18 98.2 316 25.6
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 9.3e-15 86.3 51 82.4
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.6e-14 85.5 266 30.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-13 82.0 63 61.9
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.6e-09 68.2 53 58.5
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.2e-07 61.2 55 50.9
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.3e-07 59.7 36 86.1
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.2e-06 59.3 57 56.1
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.2e-06 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.5e-06 57.8 58 55.2
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-06 57.4 32 87.5


User provided reference genes

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