Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1620.5 843 100.0
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1467.6 844 91.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1250.0 857 79.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1231.9 872 78.8
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1198.3 858 77.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.2e-306 1055.4 876 68.7
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.8e-306 1054.7 880 67.8
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 8.8e-303 1043.5 908 66.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.3e-298 1029.6 881 67.1
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.8e-298 1028.1 877 66.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.5e-297 1025.4 877 68.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 5.7e-294 1014.2 872 68.6
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 8.3e-293 1010.4 900 67.0
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.1e-292 1008.4 877 66.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 8.6e-290 1000.3 937 63.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.2e-289 998.0 871 67.3
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 4.2e-289 998.0 871 67.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 4.4e-286 988.0 867 66.1
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 4.4e-286 988.0 867 66.1
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.7e-282 976.1 802 70.2
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 5.7e-278 961.1 936 62.1
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.9e-277 958.0 853 65.9
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 7.5e-270 934.1 891 62.7
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 7.7e-206 721.5 912 49.8
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.9e-202 709.1 899 49.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.4e-199 699.9 932 48.5
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 9.1e-199 698.0 907 49.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-195 687.6 898 49.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 3.6e-195 686.0 897 49.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.0e-194 682.9 912 48.4
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.6e-193 679.9 904 48.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 6.3e-192 675.2 923 46.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 6.5e-189 665.2 853 50.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 9.4e-188 661.4 889 49.6
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 9.4e-188 661.4 893 50.2
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.6e-187 660.6 884 48.8
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.3e-186 656.8 905 46.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 5.2e-186 655.6 885 48.5
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.5e-185 654.1 793 51.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 9.7e-185 651.4 911 47.3
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.7e-184 650.6 961 45.0
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 2.8e-184 649.8 935 47.1
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 8.2e-184 648.3 909 48.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-183 647.9 906 46.9
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.1e-183 646.4 911 46.5
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.7e-182 643.3 989 45.3
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.7e-181 640.6 941 45.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 6.5e-181 638.6 981 45.1
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.9e-180 637.1 899 46.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.5e-180 636.7 805 49.3
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.2e-180 636.3 914 46.4
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 4.2e-180 636.0 883 46.8
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-179 634.0 899 45.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.1e-179 633.6 878 48.1
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.8e-178 630.6 791 49.7
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.3e-178 630.2 925 46.2
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.2e-178 629.0 994 43.2
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 8.8e-178 628.2 911 47.2
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 2.0e-177 627.1 790 49.5
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.6e-177 626.7 911 47.4
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 3.4e-177 626.3 897 47.6
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 7.5e-177 625.2 931 46.2
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 6.3e-176 622.1 889 46.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 8.3e-176 621.7 811 48.8
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 8.3e-176 621.7 962 43.3
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.1e-175 619.4 804 48.3
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.6e-174 617.5 829 47.3
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 4.5e-174 615.9 812 48.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 7.7e-174 615.1 927 46.0
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 6.6e-173 612.1 906 46.1
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 8.6e-173 611.7 802 48.0
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-172 611.3 825 47.0
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.3e-172 609.8 787 47.3
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.5e-172 609.0 912 44.8
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 7.2e-172 608.6 927 45.3
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 7.2e-172 608.6 1003 42.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.1e-171 607.1 778 47.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.8e-171 606.7 903 45.4
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.4e-170 604.4 771 48.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.4e-170 604.4 794 47.5
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 6.8e-170 602.1 922 45.8
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.5e-169 600.9 877 45.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 9.8e-169 598.2 959 44.3
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.8e-168 596.7 927 44.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.7e-168 596.3 962 44.3
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.3e-168 595.5 912 43.9
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 6.3e-168 595.5 912 44.1
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-167 594.7 962 44.0
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.0e-167 592.0 727 50.1
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 9.2e-167 591.7 867 45.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-165 587.8 958 44.3
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.3e-165 587.0 959 44.3
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.3e-165 587.0 922 43.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.5e-164 584.3 902 44.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.1e-163 580.5 1021 42.0
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.4e-162 577.8 798 45.2
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.3e-162 577.0 783 45.8
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.4e-161 573.2 921 43.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.9e-160 570.1 842 44.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.9e-160 569.3 786 46.2
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 4.1e-159 566.2 776 46.5
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 5.4e-159 565.8 796 46.5
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 5.0e-157 559.3 916 40.9
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 5.6e-156 555.8 1092 38.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.8e-154 550.8 817 44.9
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.3e-154 550.4 926 41.9
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-154 549.7 885 42.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 3.4e-153 546.6 888 44.3
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.4e-153 546.6 994 39.8
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.4e-153 546.2 973 40.9
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 7.5e-153 545.4 879 42.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-152 544.7 820 43.9
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-152 544.7 820 43.9
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.1e-151 541.6 803 44.8
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-151 540.8 886 41.6
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.1e-151 539.7 826 44.2
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 3.0e-149 533.5 998 39.0
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.3e-148 530.0 883 42.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.3e-148 528.9 803 43.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.0e-141 506.9 760 45.9
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 8.6e-141 505.4 927 40.0
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.5e-140 504.6 776 45.0
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 5.8e-137 492.7 812 40.6
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.2e-131 474.9 938 38.4
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 7.3e-124 449.1 891 37.1
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-118 431.4 914 38.3
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.0e-117 427.2 922 38.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.3e-115 421.8 753 39.6
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.1e-114 417.2 788 39.2
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.3e-100 370.5 952 34.1
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.3e-100 370.5 952 34.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.2e-97 362.1 890 34.0
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.5e-87 327.8 541 43.8
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.2e-87 327.4 764 33.8
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 6.1e-86 323.2 369 52.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.1e-85 320.1 670 36.9
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-80 305.1 333 53.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.5e-68 263.1 286 51.7
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.7e-65 254.6 365 45.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.1e-54 218.4 467 37.9
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.6e-54 217.6 246 51.2
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 3.4e-52 211.1 183 69.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.7e-52 210.3 955 26.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 5.9e-49 200.3 382 40.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 5.0e-48 197.2 260 44.6
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.6e-46 191.0 369 42.0
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.7e-40 172.2 137 67.2
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.9e-34 152.1 458 32.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.1e-29 136.3 222 38.7
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.3e-27 129.4 169 49.7
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-26 125.9 117 58.1
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.1e-26 123.6 178 47.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-23 114.8 111 53.2
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 7.3e-23 113.6 157 42.0
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-21 107.8 86 64.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.0e-21 107.8 122 54.1
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.3e-19 102.8 93 65.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 2.7e-17 95.1 79 62.0
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.0e-16 91.7 89 55.1
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-15 89.0 71 63.4
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 5.6e-15 87.4 66 63.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.3e-14 86.3 89 52.8
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 6.2e-14 84.0 119 43.7
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 5.3e-13 80.9 81 55.6
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-12 79.0 106 44.3
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-12 79.0 59 66.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 4.4e-12 77.8 67 62.7
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.8e-12 77.4 63 68.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.3e-11 76.3 57 70.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.7e-11 75.9 119 38.7
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 2.9e-11 75.1 92 41.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 6.0e-09 67.4 126 38.1
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 7.9e-09 67.0 87 42.5
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.3e-07 61.6 140 35.7
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.6e-06 59.3 52 55.8
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 4.8e-06 57.8 57 50.9
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 8.1e-06 57.0 60 51.7


User provided reference genes

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