Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.1e-82 308.5 169 100.0
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 3.5e-65 251.9 167 83.8
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 1.0e-61 240.4 170 74.7
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.8e-61 239.6 167 80.8
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 1.3e-59 233.4 170 75.3
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 2.4e-58 229.2 170 75.3
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 7.2e-55 217.6 170 75.3
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 2.7e-54 215.7 170 71.2
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 2.7e-54 215.7 170 71.2
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 2.6e-52 209.1 167 73.7
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 4.4e-52 208.4 169 70.4
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 4.4e-52 208.4 169 70.4
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 4.4e-52 208.4 169 70.4
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 3.2e-47 192.2 170 64.1
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 2.8e-38 162.5 167 53.3
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 1.2e-36 157.1 167 49.1
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 9.8e-36 154.1 167 50.9
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.3e-35 153.7 169 49.1
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.3e-35 153.7 167 49.7
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 1.3e-35 153.7 167 49.7
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 1.3e-35 153.7 169 51.5
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 1.3e-35 153.7 167 49.1
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 1.7e-35 153.3 169 50.3
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 2.8e-35 152.5 167 48.5
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 2.8e-35 152.5 167 49.1
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 3.7e-35 152.1 170 48.8
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 6.3e-35 151.4 169 48.5
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.1e-34 150.6 169 48.5
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.1e-34 150.6 169 49.7
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 1.1e-34 150.6 167 51.5
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 1.4e-34 150.2 167 51.5
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 4.1e-34 148.7 167 49.1
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 4.1e-34 148.7 167 48.5
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 5.4e-34 148.3 169 52.1
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 1.6e-33 146.7 162 50.0
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 2.0e-33 146.4 170 48.2
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 2.7e-33 146.0 167 46.7
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 2.3e-32 142.9 169 46.7
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 3.9e-32 142.1 167 45.5
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 8.6e-32 141.0 167 50.9
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.5e-31 140.2 110 78.2
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.9e-31 139.8 182 44.5
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 1.0e-29 134.0 169 44.4
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 4.0e-29 132.1 167 46.7
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 4.0e-29 132.1 167 47.3
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 2.0e-28 129.8 162 46.3
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 3.4e-28 129.0 165 41.8
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 7.5e-28 127.9 165 40.6
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 9.8e-28 127.5 169 46.7
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 1.3e-27 127.1 167 47.9
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 1.1e-26 124.0 162 41.4
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 2.4e-26 122.9 167 41.9
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 3.2e-26 122.5 167 43.1
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 3.2e-26 122.5 162 43.8
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 3.2e-26 122.5 167 43.1
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 3.2e-26 122.5 169 42.6
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 3.2e-26 122.5 169 44.4
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 7.0e-26 121.3 106 59.4
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 1.6e-25 120.2 169 40.8
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.0e-25 119.8 167 43.1
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.0e-25 118.2 196 40.8
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 6.0e-25 118.2 174 46.0
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 3.9e-24 115.5 167 41.9
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 5.0e-24 115.2 169 44.4
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 8.6e-24 114.4 169 45.0
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 1.5e-23 113.6 169 45.0
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 2.5e-23 112.8 143 50.3
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 2.1e-22 109.8 110 56.4
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 1.4e-21 107.1 167 40.1
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 1.4e-21 107.1 147 42.2
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 3.7e-19 99.0 106 50.9
AL2G14840 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 2.4e-18 96.3 60 86.7
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 3.2e-18 95.9 175 34.9
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 3.2e-18 95.9 169 39.1
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 6.0e-17 91.7 101 47.5
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 1.3e-16 90.5 204 35.3
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 5.1e-16 88.6 261 31.0
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.3e-15 85.9 74 58.1
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.3e-15 85.9 74 58.1
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 7.3e-15 84.7 169 34.3
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 9.5e-15 84.3 167 37.7
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 4.0e-13 79.0 74 58.1
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 1.5e-12 77.0 169 33.7
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 3.7e-11 72.4 92 42.4
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 3.5e-09 65.9 101 35.6
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 7.8e-09 64.7 58 55.2


User provided reference genes

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