Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 3.2e-30 134.4 68 100.0
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 1.5e-27 125.6 68 91.2
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 1.7e-23 112.1 64 89.1
Carub.0002s0297 Capsella rubella HOM05D007037 ORTHO05D006691 2.2e-23 111.7 68 82.4
BcaB07g31300 Brassica carinata HOM05D007037 ORTHO05D006691 7.5e-19 96.7 69 79.7
A09p16540 Brassica napus HOM05D007037 ORTHO05D006691 1.7e-18 95.5 68 77.9
BraA09t37292Z Brassica rapa HOM05D007037 ORTHO05D006691 1.7e-18 95.5 68 77.9
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 8.3e-18 93.2 71 69.0
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 1.1e-17 92.8 71 69.0
BcaC04g22368 Brassica carinata HOM05D007037 ORTHO05D006691 1.4e-17 92.4 62 79.0
C09p20100 Brassica napus HOM05D007037 ORTHO05D006691 1.4e-17 92.4 62 79.0
BolC9t54919H Brassica oleracea HOM05D007037 ORTHO05D006691 1.4e-17 92.4 62 79.0
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.8e-17 92.0 71 69.0
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 4.1e-17 90.9 71 67.6
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 9.1e-17 89.7 72 69.4
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 3.8e-15 84.3 70 65.7
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 5.0e-15 84.0 72 63.9
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 5.0e-15 84.0 72 63.9
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 8.5e-15 83.2 72 63.9
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 1.9e-14 82.0 72 63.9
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 8.0e-13 76.6 67 62.7
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 9.1e-09 63.2 67 50.7
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 4.5e-08 60.8 56 58.9
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 5.9e-08 60.5 64 53.1
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.0e-07 59.7 76 44.7
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 3.8e-07 57.8 83 39.8
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 3.8e-07 57.8 76 46.1
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 8.6e-07 56.6 76 42.1
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 8.6e-07 56.6 63 47.6
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.1e-06 56.2 84 42.9
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.1e-06 56.2 64 46.9
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.5e-06 55.8 81 44.4
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 1.5e-06 55.8 57 52.6
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.5e-06 55.8 80 41.2
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 1.9e-06 55.5 78 47.4
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.5e-06 55.1 80 42.5
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 3.3e-06 54.7 74 44.6
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 4.2e-06 54.3 83 41.0
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 4.2e-06 54.3 76 40.8
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 4.2e-06 54.3 64 45.3
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 4.2e-06 54.3 65 50.8
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 4.2e-06 54.3 68 44.1
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 4.2e-06 54.3 76 47.4
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 4.2e-06 54.3 80 41.2
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 4.2e-06 54.3 72 45.8
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 4.2e-06 54.3 77 40.3
Hund23465 Selenicereus undatus HOM05D007037 ORTHO05D006691 4.2e-06 54.3 66 47.0
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 5.5e-06 53.9 74 43.2
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 5.5e-06 53.9 77 39.0
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 5.5e-06 53.9 77 42.9
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 7.2e-06 53.5 76 44.7
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 7.2e-06 53.5 69 46.4
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 9.5e-06 53.1 64 43.8
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 9.5e-06 53.1 78 42.3
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 9.5e-06 53.1 78 42.3
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 9.5e-06 53.1 62 50.0


User provided reference genes

Program Settings