Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G13740 Arabidopsis lyrata HOM05D010326 ORTHO05D012728 1.9e-92 342.4 166 100.0
Carub.0011s0008 Capsella rubella HOM05D010326 ORTHO05D012728 3.5e-46 188.7 110 76.4
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 6.6e-45 184.5 99 84.8
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 8.7e-45 184.1 99 84.8
BcaC05g28658 Brassica carinata HOM05D010326 ORTHO05D012728 3.3e-44 182.2 99 83.8
BcaC01g01289 Brassica carinata HOM05D010326 ORTHO05D012728 6.2e-43 177.9 99 83.8
Aa31LG3G5580 Aethionema arabicum HOM05D010326 ORTHO05D012728 1.8e-42 176.4 123 71.5
Carub.0008s0764 Capsella rubella HOM05D010326 ORTHO05D033154 1.8e-37 159.8 88 80.7
BcaB08g34536 Brassica carinata HOM05D010326 ORTHO05D012728 3.7e-35 152.1 99 74.7
BcaC04g22485 Brassica carinata HOM05D010326 ORTHO05D012728 7.1e-31 137.9 97 71.1
THA.LOC104818562 Tarenaya hassleriana HOM05D010326 ORTHO05D000285 2.7e-30 136.0 97 61.9
AT2G14755 Arabidopsis thaliana HOM05D010326 ORTHO05D012728 3.8e-24 115.5 110 54.5
BolC5t33502H Brassica oleracea HOM05D010326 ORTHO05D012728 1.1e-18 97.4 55 81.8
BcaC01g01183 Brassica carinata HOM05D010326 ORTHO05D012728 1.4e-18 97.1 58 79.3
BolC9t54778H Brassica oleracea HOM05D010326 ORTHO05D012728 1.8e-18 96.7 53 83.0
A10p19220 Brassica napus HOM05D010326 ORTHO05D012728 3.1e-18 95.9 99 53.5
BraA03t15421Z Brassica rapa HOM05D028599 ORTHO05D027333 1.2e-14 84.0 81 46.9
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 8.8e-13 77.8 99 37.4
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.5e-12 77.0 105 36.2
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.5e-12 77.0 132 31.1
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 5.7e-12 75.1 132 31.1
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-11 72.8 132 29.5
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 8.2e-11 71.2 84 38.1
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 1.1e-10 70.9 93 32.3
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.1e-10 70.9 88 37.5
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.1e-10 70.9 84 38.1
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 1.1e-10 70.9 84 36.9
BcaC04g20609 Brassica carinata HOM05D028599 ORTHO05D027333 1.8e-10 70.1 71 46.5
BolC9t57034H Brassica oleracea HOM05D028599 ORTHO05D027333 1.8e-10 70.1 71 46.5
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 6.9e-10 68.2 108 29.6
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 6.9e-10 68.2 89 34.8
C09p41560 Brassica napus HOM05D028599 ORTHO05D027333 9.1e-10 67.8 71 45.1
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 9.1e-10 67.8 88 36.4
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 2.6e-09 66.2 89 34.8
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 2.6e-09 66.2 89 34.8
Lj1g0012065 Lotus japonicus HOM05D000876 ORTHO05D000285 5.9e-09 65.1 95 32.6
Medtr1g073440 Medicago truncatula HOM05D009922 ORTHO05D000285 5.9e-09 65.1 88 31.8
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 7.7e-09 64.7 107 29.9
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 7.7e-09 64.7 107 29.9
C05p34980 Brassica napus HOM05D012420 ORTHO05D019981 1.0e-08 64.3 127 29.1
Lj6g0025621 Lotus japonicus HOM05D000876 ORTHO05D000285 1.3e-08 63.9 143 27.3
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 1.3e-08 63.9 84 36.9
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 1.3e-08 63.9 84 36.9
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 1.3e-08 63.9 84 36.9
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 1.3e-08 63.9 87 34.5
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-08 63.5 107 29.9
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.7e-08 63.5 84 33.3
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 1.7e-08 63.5 138 28.3
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 2.2e-08 63.2 86 33.7
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 2.2e-08 63.2 86 33.7
CSS0005392 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 2.2e-08 63.2 60 45.0
CSS0013298 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.9e-08 62.8 87 33.3
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 2.9e-08 62.8 138 28.3
THA.LOC104827195 Tarenaya hassleriana HOM05D006735 ORTHO05D009558 2.9e-08 62.8 83 39.8
Atru.chr4.1880 Acer truncatum HOM05D000876 ORTHO05D000285 3.8e-08 62.4 112 27.7
CSS0005143 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 3.8e-08 62.4 87 32.2
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 3.8e-08 62.4 106 27.4
BcaC03g14787 Brassica carinata HOM05D012420 ORTHO05D039631 5.0e-08 62.0 132 29.5
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 5.0e-08 62.0 107 29.0
CSS0029673 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.0e-08 62.0 87 32.2
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 5.0e-08 62.0 138 27.5
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-08 62.0 84 34.5
QL10p013151 Quercus lobata HOM05D015848 ORTHO05D000285 5.0e-08 62.0 67 41.8
QL11p000053 Quercus lobata HOM05D015848 ORTHO05D000285 5.0e-08 62.0 67 41.8
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 6.5e-08 61.6 108 30.6
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 6.5e-08 61.6 86 34.9
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.5e-08 61.2 144 28.5
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 1.1e-07 60.8 82 32.9
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 1.1e-07 60.8 82 32.9
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 1.1e-07 60.8 100 33.0
TPR.G33386 Trifolium pratense HOM05D000034 ORTHO05D000037 1.1e-07 60.8 106 32.1
TPR.G33899 Trifolium pratense HOM05D000876 ORTHO05D000285 1.1e-07 60.8 90 33.3
Rhsim06G0024000 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.4e-07 60.5 121 24.8
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 1.9e-07 60.1 82 31.7
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 1.9e-07 60.1 82 32.9
CSS0014901 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.9e-07 60.1 87 31.0
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-07 60.1 92 30.4
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 1.9e-07 60.1 91 35.2
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 1.9e-07 60.1 91 35.2
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 1.9e-07 60.1 91 35.2
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.9e-07 60.1 121 24.0
TWI73G0844 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.9e-07 60.1 89 33.7
TWI74G0206 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.9e-07 60.1 89 33.7
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.5e-07 59.7 98 32.7
CSS0018277 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.5e-07 59.7 94 33.0
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 3.2e-07 59.3 83 32.5
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 3.2e-07 59.3 121 24.0
C09p40840 Brassica napus HOM05D006735 ORTHO05D009558 4.2e-07 58.9 99 32.3
CSS0031319 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 4.2e-07 58.9 85 30.6
CARHR286360 Cardamine hirsuta HOM05D006735 ORTHO05D009558 4.2e-07 58.9 77 32.5
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 4.2e-07 58.9 74 35.1
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 4.2e-07 58.9 86 30.2
Rhsim10G0146900 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.2e-07 58.9 121 24.0
TPR.G30704 Trifolium pratense HOM05D000876 ORTHO05D000285 4.2e-07 58.9 95 33.7
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 5.5e-07 58.5 79 34.2
CSS0045263 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.5e-07 58.5 87 28.7
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 5.5e-07 58.5 83 34.9
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 7.2e-07 58.2 74 35.1
Medtr0693s0050 Medicago truncatula HOM05D000876 ORTHO05D000285 7.2e-07 58.2 92 35.9
Medtr4g043620 Medicago truncatula HOM05D009922 ORTHO05D000285 7.2e-07 58.2 88 31.8
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 9.4e-07 57.8 77 37.7
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 9.4e-07 57.8 92 30.4
TPR.G31033 Trifolium pratense HOM05D000034 ORTHO05D000037 9.4e-07 57.8 54 44.4
TWI36G1398 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 9.4e-07 57.8 88 29.5
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.2e-06 57.4 88 30.7
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-06 57.4 88 30.7
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-06 57.4 88 30.7
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-06 57.4 88 30.7
HPP92_015385 Vanilla planifolia HOM05D000876 ORTHO05D000285 1.2e-06 57.4 85 31.8
HPP92_018135 Vanilla planifolia HOM05D000876 ORTHO05D000285 1.2e-06 57.4 159 28.3
HPP92_027007 Vanilla planifolia HOM05D000876 ORTHO05D000285 1.2e-06 57.4 85 31.8
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 1.6e-06 57.0 82 31.7
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 1.6e-06 57.0 82 31.7
Ciclev10027235m.g Citrus clementina HOM05D000876 ORTHO05D000285 1.6e-06 57.0 81 33.3
Oeu044768.1 Olea europaea HOM05D000876 ORTHO05D000285 1.6e-06 57.0 77 35.1
C02p22360 Brassica napus HOM05D012420 ORTHO05D039631 2.1e-06 56.6 70 35.7
CSS0039704 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.1e-06 56.6 87 29.9
BcaB06g27920 Brassica carinata HOM05D012420 ORTHO05D019981 2.7e-06 56.2 74 35.1
A07p01920 Brassica napus HOM05D006735 ORTHO05D009558 2.7e-06 56.2 83 32.5
FAN05G4669 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.7e-06 56.2 86 32.6
Gorai.013G161600 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.7e-06 56.2 89 31.5
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-06 55.8 86 32.6
FAN14G5115 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-06 55.8 86 32.6
FAN21G2291 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-06 55.8 86 32.6
Medtr8g468830 Medicago truncatula HOM05D009922 ORTHO05D000285 3.6e-06 55.8 88 29.5
TWI60G1225 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.6e-06 55.8 73 35.6
TWI75G0795 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.6e-06 55.8 88 28.4
C08p11240 Brassica napus HOM05D006735 ORTHO05D009558 4.7e-06 55.5 82 30.5
CANSAT78G1001 Cannabis sativa HOM05D000876 ORTHO05D000285 4.7e-06 55.5 126 27.0
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.7e-06 55.5 90 30.0
TWI81G0918 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-06 55.5 88 28.4
BraA02t06834Z Brassica rapa HOM05D012420 ORTHO05D027447 6.1e-06 55.1 60 36.7
BraA09t36193Z Brassica rapa HOM05D012420 ORTHO05D019981 6.1e-06 55.1 60 36.7
BraA09t36195Z Brassica rapa HOM05D012420 ORTHO05D027447 6.1e-06 55.1 60 36.7
DCAR_020120 Daucus carota HOM05D000876 ORTHO05D000285 6.1e-06 55.1 135 26.7
TWI38G2154 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.1e-06 55.1 61 39.3
TWI75G0526 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.1e-06 55.1 88 28.4
TPR.G36107 Trifolium pratense HOM05D009922 ORTHO05D013896 7.9e-06 54.7 87 28.7
TWI56G0680 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 7.9e-06 54.7 106 27.4


User provided reference genes

Program Settings