Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G13180 Arabidopsis lyrata HOM05D000101 ORTHO05D011607 3.8e-27 124.0 59 100.0
CARHR049180 Cardamine hirsuta HOM05D000101 ORTHO05D000089 3.4e-20 100.9 53 90.6
CARHR049210 Cardamine hirsuta HOM05D000101 ORTHO05D011607 8.5e-19 96.3 53 86.8
CARHR048990 Cardamine hirsuta HOM05D000101 ORTHO05D011607 1.9e-18 95.1 53 84.9
C09p19380 Brassica napus HOM05D000101 ORTHO05D011607 2.5e-18 94.7 53 84.9
BcaC04g22432 Brassica carinata HOM05D000101 ORTHO05D011607 4.2e-18 94.0 53 83.0
CARHR048950 Cardamine hirsuta HOM05D000101 ORTHO05D000089 4.2e-18 94.0 53 81.1
BcaC08g43505 Brassica carinata HOM05D000101 ORTHO05D000089 7.2e-18 93.2 53 79.2
C06p08920 Brassica napus HOM05D000101 ORTHO05D011607 7.2e-18 93.2 53 79.2
BolC9t54847H Brassica oleracea HOM05D000101 ORTHO05D011607 1.6e-17 92.0 53 83.0
Aa31LG2G12240 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.0e-16 89.4 53 79.2
BcaB02g09946 Brassica carinata HOM05D000101 ORTHO05D000089 2.3e-16 88.2 53 75.5
Thhalv10024140m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 3.9e-16 87.4 53 77.4
BraA09t41740Z Brassica rapa HOM05D000101 ORTHO05D000089 5.1e-16 87.0 53 75.5
CARHR013070 Cardamine hirsuta HOM05D000101 ORTHO05D000089 6.7e-16 86.7 53 75.5
A09p63930 Brassica napus HOM05D000101 ORTHO05D000089 1.5e-15 85.5 53 75.5
Aa31LG1G2310 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.3e-15 84.3 54 74.1
Aa31LG1G2920 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.3e-15 84.3 53 71.7
BcaB07g31810 Brassica carinata HOM05D000101 ORTHO05D000089 3.3e-15 84.3 53 71.7
BcaC04g22761 Brassica carinata HOM05D000101 ORTHO05D011607 5.7e-15 83.6 53 69.8
C09p15570 Brassica napus HOM05D000101 ORTHO05D000089 5.7e-15 83.6 53 69.8
BolC9t54462H Brassica oleracea HOM05D000101 ORTHO05D000089 1.7e-14 82.0 53 67.9
Aa31LG1G2330 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.2e-14 81.6 53 73.6
Aa31LG1G2900 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.7e-14 80.9 53 67.9
C05p10900 Brassica napus HOM05D000101 ORTHO05D000089 4.8e-14 80.5 53 69.8
C03p92590 Brassica napus HOM05D000101 ORTHO05D000089 6.3e-14 80.1 53 69.8
Aa31LG1G3690 Aethionema arabicum HOM05D000101 ORTHO05D000089 8.2e-14 79.7 53 71.7
Aa31LG1G3730 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.1e-13 79.3 53 69.8
BcaC05g25204 Brassica carinata HOM05D000101 ORTHO05D000089 1.1e-13 79.3 53 69.8
BolC5t29835H Brassica oleracea HOM05D000101 ORTHO05D000089 1.1e-13 79.3 53 69.8
CARHR012520 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.1e-13 79.3 53 67.9
BcaB04g20687 Brassica carinata HOM05D000101 ORTHO05D011607 1.4e-13 79.0 52 65.4
BcaC07g42581 Brassica carinata HOM05D000101 ORTHO05D000089 1.4e-13 79.0 53 73.6
Aa31LG1G2910 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.8e-13 78.6 53 66.0
BcaC01g01510 Brassica carinata HOM05D000101 ORTHO05D000089 1.8e-13 78.6 53 69.8
BolC6t35969H Brassica oleracea HOM05D000101 ORTHO05D000089 2.4e-13 78.2 45 77.8
BraA09t41678Z Brassica rapa HOM05D000101 ORTHO05D000089 2.4e-13 78.2 53 71.7
Aa31LG1G3680 Aethionema arabicum HOM05D000101 ORTHO05D000089 4.1e-13 77.4 53 67.9
Aa31LG1G3710 Aethionema arabicum HOM05D000101 ORTHO05D000089 4.1e-13 77.4 53 67.9
Aa31LG4G13240 Aethionema arabicum HOM05D000101 ORTHO05D000089 4.1e-13 77.4 53 64.2
Thhalv10023256m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 5.3e-13 77.0 53 67.9
A06p09290 Brassica napus HOM05D000101 ORTHO05D000089 6.9e-13 76.6 53 67.9
CARHR156260 Cardamine hirsuta HOM05D000101 ORTHO05D000089 6.9e-13 76.6 53 64.2
BcaC07g41710 Brassica carinata HOM05D000101 ORTHO05D000089 9.1e-13 76.3 53 67.9
BolC8t52214H Brassica oleracea HOM05D000101 ORTHO05D000089 9.1e-13 76.3 53 69.8
BolC8t52287H Brassica oleracea HOM05D000101 ORTHO05D000089 9.1e-13 76.3 53 67.9
Aa31LG1G2390 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.0e-12 75.1 53 66.0
Aa31sc78G70 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.0e-12 75.1 53 64.2
Aa31csc22G200 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.6e-12 74.7 53 64.2
AL7G41510 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 3.4e-12 74.3 53 64.2
AL1G23480 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 4.5e-12 73.9 53 66.0
BcaC07g41707 Brassica carinata HOM05D000101 ORTHO05D000089 4.5e-12 73.9 53 66.0
BolC8t52286H Brassica oleracea HOM05D000101 ORTHO05D000089 4.5e-12 73.9 53 66.0
C08p46760 Brassica napus HOM05D000101 ORTHO05D000089 5.9e-12 73.6 53 67.9
CARHR012590 Cardamine hirsuta HOM05D000101 ORTHO05D000089 7.7e-12 73.2 53 66.0
BraA09t41679Z Brassica rapa HOM05D000101 ORTHO05D000089 1.0e-11 72.8 53 66.0
A08p32950 Brassica napus HOM05D000101 ORTHO05D000089 1.3e-11 72.4 53 64.2
C08p15270 Brassica napus HOM05D000101 ORTHO05D000089 1.3e-11 72.4 53 64.2
BolC8t49156H Brassica oleracea HOM05D000101 ORTHO05D011607 1.3e-11 72.4 53 64.2
BraA08t35215Z Brassica rapa HOM05D000101 ORTHO05D000089 1.3e-11 72.4 53 64.2
BcaB03g13202 Brassica carinata HOM05D000101 ORTHO05D000089 1.7e-11 72.0 52 65.4
BcaC07g42587 Brassica carinata HOM05D000101 ORTHO05D000089 1.7e-11 72.0 53 66.0
BcaB03g16340 Brassica carinata HOM05D000101 ORTHO05D000089 2.9e-11 71.2 52 59.6
C08p25130 Brassica napus HOM05D000101 ORTHO05D011607 3.8e-11 70.9 53 66.0
BolC8t50131H Brassica oleracea HOM05D000101 ORTHO05D000089 3.8e-11 70.9 53 66.0
BraA01t03086Z Brassica rapa HOM05D000101 ORTHO05D000089 3.8e-11 70.9 53 60.4
Sp2g03980 Schrenkiella parvula HOM05D000101 ORTHO05D000089 3.8e-11 70.9 53 60.4
Aa31LG1G2290 Aethionema arabicum HOM05D000101 ORTHO05D000089 5.0e-11 70.5 53 64.2
Thhalv10023255m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 5.0e-11 70.5 53 62.3
BraA09t39784Z Brassica rapa HOM05D000101 ORTHO05D000089 8.5e-11 69.7 53 66.0
Aa31LG1G2350 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.1e-10 69.3 53 60.4
AL2G13240 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 1.1e-10 69.3 53 62.3
BcaC08g42981 Brassica carinata HOM05D000101 ORTHO05D000089 1.1e-10 69.3 53 62.3
C08p47460 Brassica napus HOM05D000101 ORTHO05D000089 1.1e-10 69.3 53 64.2
C09p19500 Brassica napus HOM05D000101 ORTHO05D000089 1.4e-10 68.9 53 58.5
BraA10t42882Z Brassica rapa HOM05D000101 ORTHO05D027591 1.4e-10 68.9 53 62.3
AL1G23590 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 1.9e-10 68.6 53 58.5
BolC6t35351H Brassica oleracea HOM05D000101 ORTHO05D000089 3.2e-10 67.8 53 62.3
AT1G12220 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 4.2e-10 67.4 53 62.3
BcaB01g00645 Brassica carinata HOM05D000101 ORTHO05D000089 5.5e-10 67.0 53 64.2
Carub.0001s1196 Capsella rubella HOM05D000101 ORTHO05D000089 5.5e-10 67.0 53 62.3
A01p29520 Brassica napus HOM05D000101 ORTHO05D000089 7.2e-10 66.6 53 56.6
BolC9t54853H Brassica oleracea HOM05D000101 ORTHO05D000089 7.2e-10 66.6 53 56.6
A09p13130 Brassica napus HOM05D000101 ORTHO05D000089 1.2e-09 65.9 52 57.7
BraA09t36959Z Brassica rapa HOM05D000101 ORTHO05D000089 1.2e-09 65.9 52 57.7
Thhalv10006784m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 1.2e-09 65.9 55 60.0
BcaB03g13138 Brassica carinata HOM05D000101 ORTHO05D000089 2.7e-09 64.7 53 62.3
BcaC07g39476 Brassica carinata HOM05D000101 ORTHO05D000089 2.7e-09 64.7 53 62.3
A09p43210 Brassica napus HOM05D000101 ORTHO05D000089 2.7e-09 64.7 53 64.2
C08p25200 Brassica napus HOM05D000101 ORTHO05D000089 2.7e-09 64.7 53 62.3
BolC8t50140H Brassica oleracea HOM05D000101 ORTHO05D000089 2.7e-09 64.7 53 62.3
BcaB01g00640 Brassica carinata HOM05D000101 ORTHO05D000089 3.6e-09 64.3 53 60.4
BcaB07g31336 Brassica carinata HOM05D000908 ORTHO05D000089 3.6e-09 64.3 35 85.7
BolC1t03702H Brassica oleracea HOM05D000101 ORTHO05D000089 3.6e-09 64.3 53 54.7
Carub.0006s2588 Capsella rubella HOM05D000101 ORTHO05D000089 3.6e-09 64.3 53 56.6
BcaB04g20286 Brassica carinata HOM05D000101 ORTHO05D000089 4.7e-09 63.9 53 54.7
Thhalv10002924m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 4.7e-09 63.9 52 55.8
Aa31LG1G2880 Aethionema arabicum HOM05D000101 ORTHO05D000089 6.1e-09 63.5 53 54.7
BraA09t39791Z Brassica rapa HOM05D000101 ORTHO05D000089 6.1e-09 63.5 53 60.4
Carub.0002s0239 Capsella rubella HOM05D000101 ORTHO05D000089 7.9e-09 63.2 53 60.4
AT1G62630 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 1.0e-08 62.8 48 64.6
AT1G63350 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 1.0e-08 62.8 48 64.6
BcaC07g41717 Brassica carinata HOM05D000101 ORTHO05D000089 1.0e-08 62.8 53 54.7
C09p15580 Brassica napus HOM05D000101 ORTHO05D000089 1.0e-08 62.8 52 53.8
BolC8t52294H Brassica oleracea HOM05D000101 ORTHO05D000089 1.0e-08 62.8 53 54.7
Carub.0002s0234 Capsella rubella HOM05D000101 ORTHO05D000089 1.0e-08 62.8 53 56.6
Sp1g10910 Schrenkiella parvula HOM05D000101 ORTHO05D000089 1.0e-08 62.8 54 55.6
A09p63950 Brassica napus HOM05D000101 ORTHO05D000089 1.8e-08 62.0 55 56.4
C06p23820 Brassica napus HOM05D000101 ORTHO05D000089 1.8e-08 62.0 53 54.7
BolC6t37550H Brassica oleracea HOM05D000101 ORTHO05D000089 1.8e-08 62.0 53 54.7
BraA09t41741Z Brassica rapa HOM05D000101 ORTHO05D000089 1.8e-08 62.0 55 56.4
CARHR220850 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.8e-08 62.0 46 58.7
BolC4t24429H Brassica oleracea HOM05D000101 ORTHO05D000089 2.3e-08 61.6 59 57.6
A09p64000 Brassica napus HOM05D000101 ORTHO05D000089 3.0e-08 61.2 53 54.7
CARHR260520 Cardamine hirsuta HOM05D000101 ORTHO05D011607 3.0e-08 61.2 53 52.8
THA.LOC104813383 Tarenaya hassleriana HOM05D000101 ORTHO05D000089 3.9e-08 60.8 53 50.9
A07p23110 Brassica napus HOM05D000101 ORTHO05D000089 5.1e-08 60.5 53 52.8
C04p28930 Brassica napus HOM05D000101 ORTHO05D000089 5.1e-08 60.5 59 57.6
BolC4t22542H Brassica oleracea HOM05D038594 ORTHO05D027301 5.1e-08 60.5 53 58.5
BcaC04g19685 Brassica carinata HOM05D000101 ORTHO05D000089 6.7e-08 60.1 53 56.6
C09p52920 Brassica napus HOM05D000101 ORTHO05D000089 6.7e-08 60.1 53 56.6
BraA10t43829Z Brassica rapa HOM05D000101 ORTHO05D000089 6.7e-08 60.1 53 56.6
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 8.8e-08 59.7 53 52.8
AT1G63360 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 1.1e-07 59.3 48 62.5
A10p17490 Brassica napus HOM05D000101 ORTHO05D000089 1.5e-07 58.9 53 56.6
BraA07t29973Z Brassica rapa HOM05D000101 ORTHO05D000089 1.5e-07 58.9 53 50.9
BcaC07g42571 Brassica carinata HOM05D000101 ORTHO05D000089 2.0e-07 58.5 55 52.7
BraA05t20349Z Brassica rapa HOM05D000101 ORTHO05D011607 2.0e-07 58.5 53 50.9
Aa31LG1G2460 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.6e-07 58.2 47 51.1
BcaC02g11243 Brassica carinata HOM05D000101 ORTHO05D000089 2.6e-07 58.2 53 49.1
C04p18920 Brassica napus HOM05D000101 ORTHO05D000089 2.6e-07 58.2 53 49.1
BolC4t23422H Brassica oleracea HOM05D000101 ORTHO05D000089 2.6e-07 58.2 53 49.1
Carub.0002s0161 Capsella rubella HOM05D000101 ORTHO05D000089 2.6e-07 58.2 53 56.6
CARHR048830 Cardamine hirsuta HOM05D000101 ORTHO05D000089 5.7e-07 57.0 48 60.4
Aa31LG1G3670 Aethionema arabicum HOM05D000101 ORTHO05D000089 7.4e-07 56.6 53 52.8
Aa31LG1G3720 Aethionema arabicum HOM05D000101 ORTHO05D011607 7.4e-07 56.6 53 52.8
BolC8t52288H Brassica oleracea HOM05D000101 ORTHO05D000089 7.4e-07 56.6 55 50.9
CARHR049710 Cardamine hirsuta HOM05D000101 ORTHO05D000089 7.4e-07 56.6 48 56.2
BcaC05g25496 Brassica carinata HOM05D000101 ORTHO05D000089 9.7e-07 56.2 53 49.1
CARHR174090 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.3e-06 55.8 53 50.9
AL2G15160 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 1.7e-06 55.5 53 49.1
AT5G63020 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 1.7e-06 55.5 53 49.1
Thhalv10023266m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 1.7e-06 55.5 48 58.3
C04p09390 Brassica napus HOM05D038594 ORTHO05D027301 2.2e-06 55.1 51 54.9
BolC5t30103H Brassica oleracea HOM05D000101 ORTHO05D000089 2.2e-06 55.1 54 50.0
BraA05t19743Z Brassica rapa HOM05D000111 ORTHO05D001475 2.2e-06 55.1 53 52.8
BcaC08g43236 Brassica carinata HOM05D000101 ORTHO05D011607 2.8e-06 54.7 53 47.2
A06p02250 Brassica napus HOM05D000101 ORTHO05D000089 2.8e-06 54.7 53 49.1
BolC6t35699H Brassica oleracea HOM05D000101 ORTHO05D011607 2.8e-06 54.7 53 47.2
BcaB02g07270 Brassica carinata HOM05D000101 ORTHO05D000089 3.7e-06 54.3 53 49.1
BcaC07g41711 Brassica carinata HOM05D000101 ORTHO05D000089 3.7e-06 54.3 55 50.9
C08p47470 Brassica napus HOM05D000101 ORTHO05D000089 3.7e-06 54.3 55 50.9
BraA06t23505Z Brassica rapa HOM05D000101 ORTHO05D000089 3.7e-06 54.3 53 49.1
CARHR049690 Cardamine hirsuta HOM05D000101 ORTHO05D000089 3.7e-06 54.3 48 54.2
BcaB07g33473 Brassica carinata HOM05D000101 ORTHO05D000089 4.8e-06 53.9 53 47.2
BcaB07g33471 Brassica carinata HOM05D000101 ORTHO05D011607 6.3e-06 53.5 53 47.2
BcaB07g33472 Brassica carinata HOM05D000101 ORTHO05D000089 6.3e-06 53.5 53 47.2
BcaB03g13413 Brassica carinata HOM05D000101 ORTHO05D000089 8.2e-06 53.1 53 49.1
A10p06140 Brassica napus HOM05D000101 ORTHO05D000089 8.2e-06 53.1 45 57.8


User provided reference genes

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