Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.3e-118 429.9 237 100.0
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.7e-110 402.9 237 94.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.9e-109 399.4 237 92.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.2e-97 359.4 236 86.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.8e-97 359.0 235 85.1
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.4e-96 356.7 235 84.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.8e-96 356.3 235 84.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 84.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 84.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 5.9e-95 351.3 235 83.8
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.0e-94 350.5 235 83.8
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.2e-93 344.4 237 83.1
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.1e-88 330.5 236 81.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.1e-82 310.5 240 75.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-77 293.9 238 73.9
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 9.7e-74 280.8 239 70.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.2e-73 277.7 240 70.0
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-72 277.3 237 71.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.0e-71 273.1 241 68.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 5.9e-71 271.6 238 68.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.9e-70 269.2 239 70.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.5e-69 266.9 238 65.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 3.2e-69 265.8 235 65.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.2e-69 265.8 235 67.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 9.4e-69 264.2 235 65.1
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.7e-68 262.7 236 69.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.6e-68 262.3 255 64.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.6e-68 262.3 248 67.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 6.1e-68 261.5 236 67.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.8e-67 260.0 240 67.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.3e-67 259.6 242 67.4
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.3e-67 259.6 241 69.7
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 5.2e-67 258.5 238 62.6
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 8.8e-67 257.7 236 66.5
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.2e-66 257.3 235 68.5
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.4e-66 255.8 245 60.0
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.7e-66 255.0 234 68.4
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.7e-66 255.0 244 64.8
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 7.5e-66 254.6 236 67.8
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 9.7e-66 254.2 235 67.7
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 9.7e-66 254.2 237 68.4
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 9.7e-66 254.2 237 68.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.7e-65 253.4 239 59.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.2e-65 253.1 235 66.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.8e-65 251.9 219 64.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.1e-64 250.8 232 67.7
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.1e-64 250.8 240 66.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.8e-64 250.0 275 60.4
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.8e-64 250.0 242 58.7
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.4e-64 249.6 219 64.4
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 4.1e-64 248.8 236 64.8
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 4.1e-64 248.8 232 67.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 4.1e-64 248.8 238 65.1
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 9.1e-64 247.7 232 67.7
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.0e-63 246.5 229 66.8
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 4.5e-63 245.4 185 77.3
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 5.9e-63 245.0 235 65.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 7.7e-63 244.6 235 58.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.2e-62 243.0 247 59.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.8e-62 242.3 167 80.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 5.0e-62 241.9 238 56.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.1e-61 240.7 236 63.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.9e-61 240.0 236 59.7
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.5e-61 239.6 238 58.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.5e-61 239.6 214 68.7
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.2e-61 239.2 246 60.6
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.2e-61 239.2 172 79.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.2e-61 238.8 236 58.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 7.2e-61 238.0 182 75.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 244 55.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 236 59.7
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.6e-60 236.9 188 74.5
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.7e-60 236.1 233 58.4
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.6e-60 235.7 207 68.1
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 4.7e-60 235.3 185 70.3
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.1e-60 235.0 237 58.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.0e-59 234.2 184 73.9
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.4e-59 233.8 270 51.9
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.4e-59 233.8 226 63.7
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 2.3e-59 233.0 235 60.9
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.0e-59 232.6 219 66.2
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.8e-59 231.5 239 60.7
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 8.8e-59 231.1 185 71.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.0e-58 229.9 228 60.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 3.4e-58 229.2 224 65.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.3e-57 227.3 193 62.2
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.7e-57 226.9 237 55.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 3.7e-57 225.7 209 64.1
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 4.1e-56 222.2 185 65.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-55 220.3 237 60.3
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-55 220.3 237 60.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.5e-55 219.2 197 60.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.3e-54 216.5 245 53.1
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.5e-53 213.0 252 51.2
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.2e-53 212.2 256 59.8
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.6e-52 210.3 182 68.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.6e-52 209.1 221 55.2
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 4.7e-52 208.8 182 65.9
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 5.2e-51 205.3 203 61.6
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 5.2e-51 205.3 261 49.0
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 8.9e-51 204.5 196 56.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.7e-49 199.1 174 66.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.0e-48 194.9 167 63.5
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.6e-47 193.7 240 55.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.5e-45 184.5 254 46.1
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 4.7e-44 182.2 224 48.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 4.0e-43 179.1 194 53.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 9.8e-42 174.5 190 50.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.3e-38 164.1 125 77.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.6e-36 156.0 142 57.7
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.3e-35 153.3 115 69.6
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 6.8e-35 151.8 174 54.0
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.2e-34 151.0 312 42.6
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-34 150.2 115 67.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.9e-33 146.4 176 48.9
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-32 144.4 98 73.5
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.2e-32 141.4 95 73.7
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.1e-28 128.3 100 62.0
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 5.2e-27 125.6 202 42.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.9e-26 121.3 153 43.8
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-25 120.9 72 79.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.1e-24 117.9 120 52.5
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.7e-23 113.2 79 65.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 7.8e-23 111.7 152 47.4
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.0e-22 111.3 255 36.5
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.3e-22 110.2 260 34.6
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.9e-22 109.4 254 35.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 5.1e-22 109.0 254 35.4
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.5e-21 106.7 223 40.4
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.5e-21 106.7 249 36.5
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.8e-19 100.5 97 69.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.2e-17 93.6 162 39.5
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.4e-16 89.0 65 72.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.3e-14 84.3 133 37.6
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 9.9e-10 68.2 51 70.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 122 39.3
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-09 67.4 136 34.6
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.9e-09 65.9 187 31.6
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 6.4e-09 65.5 108 37.0
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.0e-07 58.9 70 54.3


User provided reference genes

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