Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 8.5e-119 430.3 202 100.0
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 7.0e-97 357.5 201 85.6
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.6e-85 319.7 200 78.5
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-82 309.7 160 91.9
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 8.6e-79 297.4 185 77.3
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 1.5e-67 260.0 208 61.1
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.8e-60 236.5 196 59.7
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.4e-57 226.9 194 56.7
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 7.1e-57 224.6 195 56.9
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 3.0e-55 219.2 195 55.4
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 2.1e-53 213.0 168 60.1
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 8.9e-52 207.6 197 54.3
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 2.6e-51 206.1 196 54.1
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 2.6e-51 206.1 196 54.1
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 6.4e-50 201.4 233 47.6
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.1e-49 198.0 171 57.3
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.6e-48 196.8 176 58.5
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 3.5e-48 195.7 197 52.3
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.0e-48 194.9 177 55.9
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-47 193.4 198 50.5
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-45 187.2 198 48.0
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 1.2e-45 187.2 182 52.7
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.2e-44 181.8 174 52.3
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.0e-43 179.9 173 52.0
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 4.4e-43 178.7 175 52.6
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.8e-42 175.6 179 51.4
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 7.1e-41 171.4 169 50.3
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-39 166.8 145 55.2
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 8.7e-39 164.5 145 54.5
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 6.9e-36 154.8 156 50.6
Carub.0002s0164 Capsella rubella HOM05D007210 ORTHO05D006152 2.6e-35 152.9 89 77.5
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 9.9e-35 151.0 193 42.5
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 3.8e-34 149.1 117 62.4
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 3.8e-34 149.1 193 42.0
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 8.4e-34 147.9 181 42.0
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 5.4e-33 145.2 196 41.3
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.5e-30 137.1 177 46.3
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 2.5e-30 136.3 202 37.1
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 3.6e-29 132.5 158 44.3
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 2.0e-27 126.7 116 55.2
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.6e-27 126.3 118 57.6
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 1.2e-24 117.5 143 42.7
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.8e-23 113.6 121 49.6
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 5.6e-22 108.6 141 41.1
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 7.4e-22 108.2 174 40.8
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 9.6e-22 107.8 201 35.8
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 2.1e-21 106.7 176 38.1
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 2.8e-21 106.3 143 40.6
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 2.8e-21 106.3 143 40.6
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 2.8e-21 106.3 143 40.6
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 1.8e-20 103.6 172 37.8
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 4.0e-20 102.4 180 34.4
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 4.0e-20 102.4 192 35.9
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.2e-19 100.9 148 41.9
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 1.5e-19 100.5 174 36.8
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 5.8e-19 98.6 174 36.2
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 7.6e-19 98.2 181 36.5
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 1.0e-18 97.8 143 37.8
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 1.0e-18 97.8 143 37.8
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 1.0e-18 97.8 164 35.4
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.3e-18 97.4 136 41.2
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.9e-18 96.3 145 38.6
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 3.8e-18 95.9 143 37.8
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 6.5e-18 95.1 143 37.8
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 6.5e-18 95.1 143 37.8
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-17 94.4 139 38.8
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 1.4e-17 94.0 143 37.1
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.4e-17 94.0 139 38.1
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 2.5e-17 93.2 157 36.9
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 2.5e-17 93.2 157 36.9
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 4.2e-17 92.4 172 34.3
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 5.5e-17 92.0 153 37.3
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.1e-17 91.7 92 50.0
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.2e-16 90.9 139 38.1
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 2.7e-16 89.7 145 37.9
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 3.5e-16 89.4 136 37.5
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 1.3e-15 87.4 144 34.0
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 1.8e-15 87.0 123 38.2
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 2.3e-15 86.7 153 35.3
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 3.9e-15 85.9 136 37.5
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 6.7e-15 85.1 141 36.2
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 1.5e-14 84.0 144 33.3
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-14 83.6 141 36.2
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 2.5e-14 83.2 160 33.8
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 3.3e-14 82.8 156 34.6
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 5.7e-14 82.0 141 38.3
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 7.4e-14 81.6 142 37.3
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 1.6e-13 80.5 130 36.9
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.6e-13 80.5 130 36.9
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 2.1e-13 80.1 147 37.4
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 2.1e-13 80.1 147 37.4
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 2.1e-13 80.1 147 37.4
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 2.1e-13 80.1 103 38.8
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.8e-13 79.7 113 43.4
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 3.7e-13 79.3 154 39.0
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 3.7e-13 79.3 154 39.0
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 3.7e-13 79.3 141 36.2
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 4.8e-13 79.0 159 33.3
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 4.8e-13 79.0 147 37.4
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 8.2e-13 78.2 108 38.0
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 8.2e-13 78.2 108 38.0
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-12 77.8 129 38.8
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 1.1e-12 77.8 126 38.1
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 1.8e-12 77.0 141 36.2
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 1.8e-12 77.0 141 36.2
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 1.8e-12 77.0 156 33.3
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-12 77.0 136 36.0
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-12 77.0 156 33.3
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 2.4e-12 76.6 126 38.1
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 2.4e-12 76.6 126 38.1
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 3.1e-12 76.3 165 32.7
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 4.1e-12 75.9 127 37.8
Thhalv10024042m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 4.1e-12 75.9 187 33.2
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 4.1e-12 75.9 116 37.1
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 5.3e-12 75.5 142 34.5
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 5.3e-12 75.5 128 37.5
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 9.0e-12 74.7 143 32.9
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 2.0e-11 73.6 141 36.2
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 2.6e-11 73.2 155 32.9
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.6e-11 71.6 166 30.7
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 1.0e-10 71.2 132 32.6
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 6.5e-10 68.6 161 36.0
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 6.5e-10 68.6 155 35.5
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.4e-09 67.4 143 35.0
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.5e-09 66.6 112 36.6
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 5.5e-09 65.5 123 34.1
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 5.5e-09 65.5 137 32.1
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 7.1e-09 65.1 166 30.1
Sp2g01340 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.1e-08 63.5 68 50.0
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 4.6e-08 62.4 157 32.5
C04p29420 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-07 60.1 202 24.3
BolC4t24471H Brassica oleracea HOM05D007210 ORTHO05D006152 2.3e-07 60.1 185 24.9
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 3.0e-07 59.7 163 34.4
Aa31LG2G15570 Aethionema arabicum HOM05D002666 ORTHO05D004769 3.9e-07 59.3 151 29.8
Carub.0007s2681 Capsella rubella HOM05D008242 ORTHO05D012602 3.9e-07 59.3 139 33.1
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 5.1e-07 58.9 119 36.1
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 1.9e-06 57.0 168 29.8
CARHR040780 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.9e-06 57.0 148 29.1
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 5.7e-06 55.5 119 34.5
DCAR_008845 Daucus carota HOM05D014660 ORTHO05D016977 7.4e-06 55.1 55 45.5
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 9.7e-06 54.7 123 35.0


User provided reference genes

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