Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.7e-121 438.7 227 100.0
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.6e-118 429.5 227 96.9
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 6.2e-118 427.6 228 96.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 3.1e-117 425.2 227 96.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 4.4e-116 421.4 227 94.7
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.9e-115 418.7 227 94.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.9e-115 418.7 227 94.3
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.9e-115 417.9 227 93.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 6.4e-115 417.5 227 93.8
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 2.4e-114 415.6 227 92.1
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.0e-112 410.2 227 92.1
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 3.0e-112 408.7 227 92.5
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.1e-109 400.2 214 94.4
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.7e-105 385.6 237 85.2
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 82.8
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.1e-101 373.6 223 84.8
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 82.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.8e-101 372.9 218 86.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.9
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.8e-101 370.9 216 87.0
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 80.2
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.9e-101 370.5 217 83.4
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 81.1
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 80.2
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.5
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.0e-100 369.4 217 83.9
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 79.7
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 80.2
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 80.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 80.6
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.4e-100 368.6 217 84.8
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 81.1
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.4e-100 368.6 226 80.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.4e-100 368.2 228 81.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 81.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.6e-100 367.5 217 84.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 9.9e-100 367.1 223 83.4
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.3e-99 366.7 226 79.6
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.3e-99 366.7 217 83.9
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 81.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.7e-99 366.3 217 84.3
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.7e-99 366.3 230 81.3
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.9e-99 365.5 226 79.6
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.9e-99 365.5 217 83.4
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 81.1
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.8e-99 365.2 226 79.6
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.8e-99 365.2 229 80.8
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 8.4e-99 364.0 217 82.5
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.4e-98 363.2 229 80.8
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 79.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.4e-98 362.5 211 84.4
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 81.5
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.4e-98 362.5 221 82.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.2e-98 362.1 221 83.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.4e-98 361.3 226 78.8
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 79.7
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 7.1e-98 360.9 219 81.7
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 79.7
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.2e-97 360.1 228 80.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.2e-97 360.1 217 83.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 3.5e-97 358.6 227 78.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 4.6e-97 358.2 227 77.5
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 6.0e-97 357.8 227 78.0
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.8e-97 357.5 216 81.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.0e-96 357.1 227 78.4
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.7e-96 356.3 227 77.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.0
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.0
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 78.0
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-96 355.1 217 82.9
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.9e-96 355.1 228 79.8
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 6.6e-96 354.4 217 81.6
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 6.6e-96 354.4 224 79.9
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.6e-96 354.4 227 77.1
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 8.7e-96 354.0 227 77.5
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.5e-95 353.2 227 77.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.9e-95 352.8 233 77.3
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.9e-95 352.8 227 77.1
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.3e-95 352.1 227 77.5
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.3e-95 351.7 228 78.9
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 5.6e-95 351.3 227 76.7
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 5.6e-95 351.3 228 78.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 7.3e-95 350.9 227 77.1
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.3e-94 350.1 227 76.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.6e-94 349.7 224 78.6
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.6e-94 348.6 228 78.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 6.2e-94 347.8 214 80.8
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 8.1e-94 347.4 227 76.2
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.1e-93 347.1 227 78.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.4e-93 346.7 214 79.4
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.4e-93 345.9 227 78.0
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.1e-93 345.5 207 82.1
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 4.0e-93 345.1 217 79.7
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.4e-92 341.7 206 81.6
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.7e-91 339.7 227 73.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.2e-91 339.3 214 79.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 6.4e-91 337.8 214 78.0
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 8.4e-91 337.4 215 79.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.1e-90 337.0 225 75.1
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.4e-90 335.9 205 82.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 7.1e-90 334.3 206 80.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.7e-89 332.4 214 78.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 4.6e-89 331.6 206 78.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.6e-89 331.6 213 77.5
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 6.0e-89 331.3 214 79.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.7e-88 329.7 214 75.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.0e-88 328.9 227 73.6
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 6.6e-88 327.8 265 65.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 9.6e-87 323.9 214 75.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.6e-86 322.0 202 81.7
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 9.9e-84 313.9 214 72.9
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.5e-81 305.4 212 71.2
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.6e-81 305.1 160 98.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 5.1e-80 301.6 195 75.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.7e-80 301.2 195 76.4
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.9e-79 299.7 190 77.9
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.6e-78 296.6 191 77.5
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.2e-78 294.7 164 92.7
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 4.0e-77 292.0 227 69.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.2e-75 286.2 214 67.3
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 9.3e-74 280.8 224 65.2
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.3e-72 276.9 181 76.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 5.1e-72 275.0 220 65.9
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.2e-67 259.6 229 63.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.9e-67 259.2 164 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 6.5e-67 258.1 209 63.2
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 5.5e-66 255.0 227 61.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.6e-65 251.9 193 68.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.0e-64 250.8 197 67.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.3e-63 245.7 150 80.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.2e-59 233.0 144 78.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.9e-59 232.6 237 52.3
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.2e-58 229.2 164 72.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.8e-56 223.4 215 54.4
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 4.7e-49 198.7 201 57.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.1e-48 195.3 131 71.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.2e-38 163.3 99 76.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.8e-38 162.9 115 68.7
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.1e-37 159.5 108 74.1
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-27 127.5 109 62.4
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.9e-27 126.3 89 68.5
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 6.5e-27 125.2 92 63.0
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-23 113.6 112 57.1
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 7.5e-23 111.7 135 47.4
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.2e-22 110.2 70 84.3
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.6e-18 95.5 51 92.2
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-17 93.2 68 70.6
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 4.0e-16 89.4 63 63.5
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-13 80.5 98 45.9
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.7e-12 76.6 208 29.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.9e-12 75.5 114 42.1
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-07 60.5 63 55.6


User provided reference genes

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