Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.7e-63 245.7 119 100.0
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.8e-60 235.7 119 96.6
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.0e-59 232.3 119 95.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-57 226.1 119 92.4
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-57 226.1 119 92.4
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.4e-57 226.1 119 92.4
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.4e-57 226.1 119 92.4
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.4e-57 225.3 117 93.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 3.2e-57 224.9 119 91.6
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 3.2e-57 224.9 119 91.6
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 3.2e-57 224.9 119 91.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 4.2e-57 224.6 119 91.6
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.2e-57 224.6 119 91.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 7.1e-57 223.8 119 90.8
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 9.3e-57 223.4 119 90.8
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.2e-56 223.0 119 90.8
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.2e-56 223.0 119 90.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.5e-51 206.1 119 82.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.3e-50 203.0 135 77.0
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.2e-50 202.2 117 82.1
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 3.8e-50 201.4 119 79.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 78.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 79.0
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 79.0
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 4.9e-50 201.1 119 79.0
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 6.4e-50 200.7 118 81.4
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.4e-49 199.5 119 77.3
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.4e-49 198.7 117 78.6
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.4e-49 198.7 117 78.6
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.2e-48 196.4 119 76.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.6e-48 196.1 119 78.2
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-48 196.1 119 78.2
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.1e-48 195.7 119 78.2
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.7e-48 195.3 117 76.9
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 78.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 76.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 77.3
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 6.0e-48 194.1 114 78.1
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 6.0e-48 194.1 117 76.9
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 7.9e-48 193.7 116 79.3
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 7.9e-48 193.7 119 75.6
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 75.9
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.3e-47 192.2 119 74.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.3e-47 192.2 116 79.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.1e-47 191.0 119 76.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.1e-47 191.0 119 75.6
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 5.1e-47 191.0 120 75.8
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 6.6e-47 190.7 114 78.1
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 8.7e-47 190.3 114 79.8
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 8.7e-47 190.3 119 73.9
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 8.7e-47 190.3 114 76.3
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 74.8
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.1e-46 189.9 114 76.3
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 75.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.1e-46 189.9 116 76.7
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.5e-46 189.5 116 75.9
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 116 77.6
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.3e-46 188.3 115 75.7
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 4.3e-46 188.0 114 77.2
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 72.3
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 72.3
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 72.3
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 72.3
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 72.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.6e-46 187.6 113 77.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.6e-46 187.6 116 75.9
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 5.6e-46 187.6 114 75.4
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 7.3e-46 187.2 114 78.9
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 7.3e-46 187.2 114 76.3
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 7.3e-46 187.2 114 76.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.6e-46 186.8 119 73.9
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 75.7
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 71.4
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.3e-45 186.4 118 71.2
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.3e-45 186.4 119 71.4
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.6e-45 186.0 116 75.0
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.6e-45 186.0 116 74.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.6e-45 186.0 116 75.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 73.1
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 71.4
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.6e-45 184.9 116 73.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.8e-45 184.5 116 73.3
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.2e-45 184.1 116 74.1
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 8.1e-45 183.7 119 75.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 8.1e-45 183.7 116 75.9
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-44 183.3 116 73.3
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-44 183.3 116 73.3
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.1e-44 183.3 116 73.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.4e-44 183.0 116 73.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.4e-44 183.0 114 74.6
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.8e-44 182.6 116 74.1
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 3.1e-44 181.8 125 71.2
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.1e-44 181.8 116 73.3
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 74.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 74.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 74.1
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.3e-44 181.0 116 75.0
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 6.9e-44 180.6 117 71.8
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 6.9e-44 180.6 117 71.8
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 6.9e-44 180.6 119 70.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 115 73.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.5e-43 179.5 115 73.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.0e-43 179.1 115 73.0
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 2.6e-43 178.7 129 65.9
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.4e-43 178.3 115 73.9
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 4.5e-43 177.9 119 70.6
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.3e-42 176.4 125 67.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.7e-42 176.0 115 69.6
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.8e-42 174.9 119 66.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.9e-42 174.5 117 68.4
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.1e-41 173.3 118 69.5
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 2.4e-41 172.2 116 68.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.7e-40 168.7 115 71.3
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.8e-39 166.0 119 63.0
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.8e-39 166.0 119 63.0
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 6.7e-39 164.1 116 67.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 6.7e-39 164.1 165 50.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 9.6e-38 160.2 116 67.2
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.1e-37 159.1 104 72.1
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 8.1e-37 157.1 101 75.2
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 8.1e-37 157.1 101 75.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 8.1e-37 157.1 98 75.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 4.5e-35 151.4 101 71.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.0e-34 150.2 101 70.3
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-34 149.8 117 63.2
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.2e-34 149.1 100 73.0
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.2e-34 149.1 97 71.1
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.6e-32 142.9 122 59.0
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 4.6e-32 141.4 100 66.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.0e-32 141.0 118 58.5
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.8e-31 139.4 115 54.8
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.8e-31 139.4 112 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 2.3e-31 139.0 115 59.1
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 8.7e-31 137.1 103 61.2
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.4e-28 129.0 96 66.7
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-26 122.9 98 63.3
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.0e-23 113.6 119 51.3
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-21 106.7 56 85.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.6e-21 106.3 65 75.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 8.2e-21 104.0 56 83.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.1e-20 103.6 62 74.2
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.8e-20 102.8 57 80.7
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 5.3e-20 101.3 65 72.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 6.9e-20 100.9 69 68.1
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.2e-19 100.1 63 69.8
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.5e-19 99.8 65 69.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 2.0e-19 99.4 108 51.9
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.0e-19 99.4 59 74.6
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 5.9e-19 97.8 59 72.9
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-18 95.9 53 83.0
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.9e-18 95.5 52 82.7
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.9e-17 92.8 160 37.5
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.2e-16 90.1 53 75.5
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.6e-16 88.6 52 76.9
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 6.1e-16 87.8 131 37.4
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.0e-15 87.0 116 43.1
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 3.9e-15 85.1 138 38.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 4.5e-11 71.6 51 70.6
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 2.5e-09 65.9 72 45.8
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 5.1e-07 58.2 35 77.1
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.5e-06 56.6 102 43.1


User provided reference genes

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