Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 5.0e-25 117.5 84 100.0
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-20 102.8 84 76.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-19 99.0 84 77.4
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.1e-19 97.8 84 73.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.1e-18 95.5 84 73.8
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.7e-18 95.1 84 72.6
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.7e-18 95.1 84 72.6
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.5e-18 94.7 50 86.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-18 94.0 84 75.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.0e-18 94.0 50 88.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 7.8e-18 93.6 83 60.2
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.0e-17 93.2 83 71.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.0e-17 93.2 50 86.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-17 92.8 50 82.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-17 92.4 83 60.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.7e-17 92.4 50 84.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.3e-17 92.0 50 86.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.9e-17 91.3 50 84.0
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 3.9e-17 91.3 84 67.9
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.9e-17 91.3 50 80.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-17 90.9 84 66.7
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-17 90.9 84 66.7
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-17 90.9 84 66.7
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-17 90.9 84 66.7
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 5.1e-17 90.9 84 66.7
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 6.6e-17 90.5 50 76.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.6e-17 90.5 50 80.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 6.6e-17 90.5 49 83.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 6.6e-17 90.5 49 83.7
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 6.6e-17 90.5 50 82.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.5e-16 89.4 47 85.1
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.5e-16 89.4 50 82.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.9e-16 89.0 50 78.0
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-16 88.6 50 80.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 3.3e-16 88.2 47 85.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.8e-15 85.1 48 77.1
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 8.1e-15 83.6 48 68.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.1e-14 83.2 47 74.5
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.4e-14 82.8 44 84.1
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-14 82.8 44 84.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-14 82.8 44 84.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-14 82.8 50 70.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.4e-14 82.8 47 78.7
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.8e-14 82.4 47 76.6
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.8e-14 82.4 84 52.4
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.8e-14 82.4 50 72.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.4e-14 82.0 45 77.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.1e-14 81.6 84 57.1
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.0e-14 81.3 50 74.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 5.2e-14 80.9 50 72.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 5.2e-14 80.9 50 70.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 5.2e-14 80.9 50 72.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.2e-14 80.9 49 71.4
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.2e-14 80.9 44 81.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 6.8e-14 80.5 44 77.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 6.8e-14 80.5 44 79.5
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 6.8e-14 80.5 45 73.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 8.9e-14 80.1 44 77.3
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 8.9e-14 80.1 50 72.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 8.9e-14 80.1 45 77.8
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.2e-13 79.7 44 79.5
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.2e-13 79.7 84 51.2
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.2e-13 79.7 84 48.8
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.2e-13 79.7 84 48.8
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.2e-13 79.7 84 48.8
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.5e-13 79.3 50 68.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.5e-13 79.3 47 74.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.5e-13 79.3 84 50.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.5e-13 79.3 84 51.2
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.5e-13 79.3 50 68.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.5e-13 79.3 47 68.1
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 2.0e-13 79.0 50 70.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.0e-13 79.0 45 77.8
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.0e-13 79.0 50 68.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.0e-13 79.0 50 70.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.0e-13 79.0 47 68.1
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.6e-13 78.6 50 68.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.6e-13 78.6 44 79.5
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.6e-13 78.6 50 68.0
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.6e-13 78.6 50 68.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.4e-13 78.2 45 75.6
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 3.4e-13 78.2 47 72.3
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.4e-13 78.2 50 70.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.4e-13 77.8 44 77.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.8e-13 77.4 45 73.3
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 5.8e-13 77.4 45 71.1
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.8e-13 77.4 82 48.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.8e-13 77.4 48 70.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 5.8e-13 77.4 48 70.8
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 5.8e-13 77.4 47 72.3
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.6e-13 77.0 44 77.3
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 7.6e-13 77.0 44 75.0
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 7.6e-13 77.0 50 66.0
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 7.6e-13 77.0 43 76.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 9.9e-13 76.6 44 77.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 9.9e-13 76.6 45 75.6
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 9.9e-13 76.6 47 74.5
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.3e-12 76.3 50 68.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-12 76.3 44 77.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.7e-12 75.9 47 72.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.7e-12 75.9 47 72.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.7e-12 75.9 47 72.3
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.7e-12 75.9 48 68.8
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.7e-12 75.9 47 68.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.2e-12 75.5 46 71.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.2e-12 75.5 47 72.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.2e-12 75.5 44 75.0
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-12 75.5 47 72.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-12 75.5 47 72.3
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.2e-12 75.5 47 72.3
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.9e-12 75.1 50 66.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.9e-12 75.1 82 46.3
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 3.8e-12 74.7 47 68.1
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 3.8e-12 74.7 47 70.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-12 74.7 42 76.2
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-12 74.7 47 70.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-12 74.7 47 70.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.8e-12 74.7 47 70.2
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-12 74.3 50 72.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.9e-12 74.3 47 70.2
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 4.9e-12 74.3 44 75.0
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 6.4e-12 73.9 45 71.1
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.1e-11 73.2 47 70.2
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.1e-11 73.2 44 70.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.4e-11 72.8 44 68.2
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.2e-11 71.6 82 43.9
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.1e-11 71.2 42 69.0
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 5.4e-11 70.9 50 62.0
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.2e-10 69.7 44 63.6
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.1e-10 68.9 46 63.0
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 6.0e-10 67.4 45 60.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 6.0e-10 67.4 43 69.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.0e-09 66.6 47 57.4
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.3e-09 66.2 48 60.4
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 3.9e-09 64.7 48 62.5
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.1e-08 63.2 45 53.3
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.3e-08 61.6 38 65.8
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 4.3e-08 61.2 35 71.4
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-07 59.7 35 71.4
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.7e-07 57.8 35 71.4
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 5.2e-06 54.3 67 43.3


User provided reference genes

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