Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 2.5e-179 632.1 346 100.0
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 7.4e-155 550.8 356 88.5
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 1.0e-135 487.3 357 81.0
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 2.1e-125 453.0 350 78.0
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 5.5e-118 428.3 352 71.6
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 3.6e-117 425.6 352 73.9
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 3.8e-95 352.4 348 68.4
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 1.5e-94 350.5 352 67.3
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 7.5e-91 338.2 347 65.1
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 4.9e-90 335.5 351 65.0
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 1.1e-89 334.3 347 64.6
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 1.1e-89 334.3 347 64.6
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 4.9e-74 282.3 350 55.4
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 8.1e-69 265.0 372 50.8
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 8.4e-50 201.8 266 51.9
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 5.1e-47 192.6 349 40.1
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 6.6e-47 192.2 254 48.8
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.5e-46 190.3 242 49.2
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 3.3e-46 189.9 345 39.4
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 4.3e-46 189.5 334 39.8
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 4.3e-46 189.5 268 44.0
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 9.6e-46 188.3 244 48.4
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 2.1e-45 187.2 236 51.3
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 2.1e-45 187.2 350 38.6
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.8e-45 186.8 272 45.6
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.4e-44 184.5 271 45.4
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 5.3e-44 182.6 389 39.8
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 5.8e-43 179.1 356 39.3
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 9.9e-43 178.3 374 37.2
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.2e-42 177.2 350 40.6
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 4.9e-42 176.0 370 37.0
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 8.4e-42 175.3 275 45.1
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.1e-41 174.9 282 44.0
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 1.4e-41 174.5 267 43.4
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.2e-41 173.3 267 45.7
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 3.2e-41 173.3 311 41.2
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 7.1e-41 172.2 302 41.4
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 9.3e-41 171.8 378 37.0
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.6e-40 171.0 237 44.7
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 2.7e-40 170.2 362 36.5
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.9e-39 166.4 308 40.3
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 8.7e-39 165.2 277 43.0
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.5e-38 163.7 308 39.9
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 3.3e-38 163.3 308 39.9
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.3e-38 163.3 308 39.9
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 4.3e-38 162.9 272 43.0
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 5.6e-38 162.5 324 40.1
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 1.6e-37 161.0 304 39.8
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.8e-37 159.5 307 38.8
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 8.1e-37 158.7 325 36.6
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 1.8e-36 157.5 331 37.5
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 4.0e-36 156.4 381 35.7
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 9.0e-36 155.2 245 40.8
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.2e-35 154.8 270 42.2
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.5e-35 154.5 338 39.1
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.5e-35 154.5 310 37.4
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 2.9e-34 150.2 280 37.1
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.9e-34 150.2 256 40.2
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 4.9e-34 149.4 242 40.9
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.1e-33 148.3 239 41.0
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.1e-33 148.3 242 38.4
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.9e-33 147.5 242 40.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.2e-33 146.4 257 39.3
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 5.5e-33 146.0 322 39.1
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 1.6e-32 144.4 242 43.0
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.1e-32 144.1 257 37.7
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 2.7e-32 143.7 330 37.0
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 1.3e-31 141.4 218 41.7
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.5e-30 137.9 298 39.9
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 7.4e-30 135.6 364 35.4
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 1.1e-28 131.7 253 40.3
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 4.0e-28 129.8 308 36.7
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 5.3e-28 129.4 284 38.7
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.6e-27 127.1 330 34.5
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 2.6e-27 127.1 355 36.9
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 3.4e-27 126.7 376 34.0
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 2.9e-26 123.6 219 38.8
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 2.9e-26 123.6 214 42.5
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 3.2e-25 120.2 345 33.6
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 5.5e-25 119.4 379 30.1
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 7.1e-25 119.0 266 35.7
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 3.0e-23 113.6 248 36.7
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 3.9e-23 113.2 364 30.8
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 1.5e-19 101.3 306 30.7
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 4.5e-19 99.8 348 33.3
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 5.9e-19 99.4 169 39.6
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 6.1e-16 89.4 143 43.4
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 1.8e-15 87.8 195 35.4
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 6.9e-12 75.9 170 37.1
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 5.0e-10 69.7 109 39.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 7.4e-06 55.8 242 30.6


User provided reference genes

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