Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 2.0e-115 419.1 212 100.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 8.3e-109 397.1 211 95.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.3e-105 384.8 214 94.4
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.8e-104 382.1 212 92.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.4e-102 375.2 214 92.5
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 9.9e-102 373.6 214 92.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.7e-101 371.7 208 94.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-100 369.0 214 90.2
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-97 359.8 215 88.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.9e-97 359.4 216 88.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.9e-97 359.4 216 88.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.3e-97 358.2 216 87.5
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.3e-97 358.2 216 87.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 5.6e-97 357.8 214 87.9
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 7.3e-97 357.5 216 87.5
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 9.6e-97 357.1 215 87.9
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-96 355.5 215 87.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-96 355.5 215 87.4
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-88 328.2 202 86.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 6.2e-88 327.8 212 80.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.2e-80 301.2 216 73.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.1e-79 298.9 216 73.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.4e-78 295.4 216 72.7
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.1e-75 286.2 204 73.0
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.1e-74 281.6 212 69.3
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 7.4e-73 277.7 205 70.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.4e-73 277.7 196 73.5
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.6e-70 269.2 197 71.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.5e-70 268.5 214 65.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.8e-70 268.1 190 71.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-69 267.3 207 69.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.7e-69 266.5 211 67.8
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 3.8e-69 265.4 190 69.5
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 4.9e-69 265.0 211 67.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.9e-69 265.0 191 72.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 6.5e-69 264.6 157 84.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 8.4e-69 264.2 211 69.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.2e-68 262.3 212 68.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.5e-68 261.5 206 68.4
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 7.1e-68 261.2 206 68.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 9.3e-68 260.8 208 65.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.3e-68 260.8 195 72.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.2e-67 260.4 256 57.4
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.6e-67 260.0 196 70.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.1e-67 259.6 199 69.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.1e-67 259.6 193 72.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.7e-67 259.2 203 67.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-67 258.8 188 71.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 4.6e-67 258.5 192 70.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.0e-67 258.1 210 66.2
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-66 256.9 209 65.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.3e-66 256.1 208 64.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.3e-66 256.1 196 71.4
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.3e-66 256.1 210 67.6
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 8.7e-66 254.2 204 69.6
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.1e-65 253.8 154 81.8
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-65 253.8 187 72.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.1e-65 253.8 215 61.9
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.1e-65 253.8 195 70.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.5e-65 252.7 157 79.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.3e-65 252.3 150 82.7
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.3e-65 252.3 202 67.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.3e-65 252.3 195 70.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.3e-65 252.3 195 70.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.3e-65 251.9 154 81.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.4e-65 251.1 210 68.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.6e-65 250.8 152 81.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.6e-64 250.0 210 68.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.6e-64 250.0 162 76.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-64 250.0 212 66.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-64 249.6 155 80.6
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.8e-64 249.2 212 64.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 4.8e-64 248.4 159 76.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 4.8e-64 248.4 190 67.9
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 6.2e-64 248.1 211 64.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 8.2e-64 247.7 206 64.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.4e-63 246.9 214 64.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-63 246.9 214 64.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-63 246.9 214 64.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.4e-63 246.9 200 67.5
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.8e-63 246.5 219 65.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 197 68.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 197 68.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 210 65.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 5.3e-63 245.0 203 63.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 6.9e-63 244.6 193 67.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 9.0e-63 244.2 214 64.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-62 243.0 214 63.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-62 242.7 214 63.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-61 240.4 197 67.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.9e-61 239.2 153 75.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.1e-60 237.3 156 74.4
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-60 236.1 191 67.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.2e-60 235.7 200 64.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.2e-60 235.7 209 64.6
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.5e-59 232.3 198 64.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.5e-59 232.3 193 65.8
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.6e-59 231.9 199 62.8
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.7e-58 228.0 197 62.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-57 227.3 153 72.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.3e-57 225.7 217 56.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-57 225.3 218 59.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.2e-56 223.0 200 60.5
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 8.2e-56 221.1 201 61.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.1e-55 220.7 210 57.6
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 5.3e-55 218.4 193 61.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.5e-54 216.9 197 62.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.3e-53 213.8 176 63.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.7e-53 213.4 211 57.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-53 213.0 120 85.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.9e-53 212.6 188 64.4
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 5.5e-52 208.4 208 54.8
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 9.4e-52 207.6 263 47.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-51 206.8 155 67.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.6e-51 205.7 189 57.1
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.1e-49 200.7 165 65.5
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.2e-48 196.4 156 64.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.8e-48 196.1 158 63.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.2e-48 194.5 147 68.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 4.1e-47 192.2 118 76.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.3e-45 187.2 101 90.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-44 184.1 214 52.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-44 184.1 214 52.3
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 5.5e-44 181.8 152 67.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 5.5e-44 181.8 120 74.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.6e-43 179.1 120 72.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.8e-42 176.8 185 53.5
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.3e-37 160.6 219 47.5
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.0e-37 158.7 93 79.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.1e-35 153.3 106 67.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.0e-34 151.0 122 59.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.0e-34 149.4 168 49.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.0e-34 149.1 130 56.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.3e-33 146.0 112 59.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 9.7e-33 144.4 80 86.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.1e-31 139.4 134 52.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.1e-28 131.0 189 41.3
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.4e-25 119.0 80 72.5
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.4e-23 113.2 129 53.5
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.2e-20 102.8 150 44.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.8e-17 91.3 71 66.2
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-13 79.0 138 40.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 7.0e-07 58.5 64 54.7


User provided reference genes

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