Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.9e-62 242.3 119 100.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.1e-60 235.0 119 96.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 6.8e-60 233.8 119 94.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.6e-56 222.6 119 88.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.3e-55 219.5 119 87.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 5.1e-55 217.6 119 86.6
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 6.6e-55 217.2 119 87.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 8.1e-53 210.3 113 86.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.1e-52 209.9 113 85.8
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.4e-52 208.8 113 87.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.1e-52 208.4 113 85.8
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.0e-52 208.0 112 86.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.6e-51 205.3 119 82.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.4e-51 204.5 116 81.0
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 7.6e-51 203.8 116 81.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.4e-49 198.7 112 82.1
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.9e-48 193.7 114 76.3
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.9e-48 193.7 111 80.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.3e-47 193.0 111 78.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.3e-47 193.0 111 78.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.3e-47 193.0 111 76.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.3e-47 193.0 111 77.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.7e-47 192.6 111 77.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.9e-47 191.4 111 76.6
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.9e-47 191.4 109 81.7
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 6.6e-47 190.7 111 74.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 8.7e-47 190.3 111 74.8
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-46 189.9 111 76.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-46 189.9 111 76.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-46 189.9 111 76.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-46 189.9 111 76.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.1e-46 189.9 111 77.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.5e-46 189.5 111 75.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.5e-46 189.5 115 73.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.9e-46 189.1 111 77.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-46 189.1 113 77.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-46 189.1 113 77.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.9e-46 189.1 113 77.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-46 189.1 111 77.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-46 189.1 111 75.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-46 188.7 114 74.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.5e-46 188.7 113 73.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.5e-46 188.7 111 77.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.5e-46 188.7 111 77.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.3e-46 188.3 112 75.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.3e-46 188.3 114 72.8
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 3.3e-46 188.3 110 77.3
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.3e-46 188.3 113 71.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.3e-46 188.0 111 74.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.3e-46 188.0 111 75.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.6e-46 187.6 111 75.7
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.6e-46 187.6 114 73.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 5.6e-46 187.6 114 74.6
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 5.6e-46 187.6 111 76.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.6e-46 187.6 111 74.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 7.3e-46 187.2 111 76.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 7.3e-46 187.2 111 74.8
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 9.6e-46 186.8 111 75.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 9.6e-46 186.8 111 76.6
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.3e-45 186.4 114 73.7
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-45 186.4 112 75.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.3e-45 186.4 112 75.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.3e-45 186.4 112 75.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.1e-45 185.7 111 74.8
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.8e-45 185.3 112 73.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.6e-45 184.9 112 73.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.6e-45 184.9 114 72.8
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.6e-45 184.9 111 75.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 3.6e-45 184.9 112 74.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 4.8e-45 184.5 110 75.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 4.8e-45 184.5 113 74.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.2e-45 184.1 114 72.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 8.1e-45 183.7 110 76.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 8.1e-45 183.7 111 73.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.1e-44 183.3 114 71.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.1e-44 183.3 111 73.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.1e-44 183.3 114 73.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-44 183.0 107 76.6
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.4e-44 183.0 111 73.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-44 183.0 111 75.7
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.8e-44 182.6 111 71.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.8e-44 182.6 112 72.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.8e-44 182.6 112 74.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.4e-44 182.2 114 71.9
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.4e-44 182.2 114 71.9
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.1e-44 181.8 110 75.5
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.1e-44 181.8 111 72.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 4.0e-44 181.4 110 74.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.3e-44 181.0 111 71.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.3e-44 181.0 111 72.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.9e-44 180.6 111 73.0
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 9.0e-44 180.3 114 71.9
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 9.0e-44 180.3 112 74.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-43 179.9 111 72.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.0e-43 179.1 111 72.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.0e-43 179.1 113 73.5
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.6e-43 178.7 111 72.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.8e-43 177.6 113 68.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.8e-43 177.6 111 72.1
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 5.8e-43 177.6 108 71.3
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 7.6e-43 177.2 111 70.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 9.9e-43 176.8 111 68.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-42 176.0 111 71.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.9e-42 175.3 111 70.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 3.8e-42 174.9 111 67.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 8.4e-42 173.7 111 70.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.1e-41 173.3 111 67.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.4e-41 172.2 111 70.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.2e-41 171.8 129 65.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.4e-41 171.0 103 73.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.6e-40 167.9 111 66.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.0e-39 166.8 111 69.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.9e-38 162.5 106 67.0
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.3e-38 161.4 92 79.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.4e-38 160.6 95 72.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-37 159.8 109 71.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.6e-37 159.5 143 54.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-35 152.5 106 72.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-35 152.5 106 72.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-35 152.5 106 72.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 2.0e-35 152.5 106 72.6
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 6.0e-32 141.0 113 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.1e-30 136.7 109 54.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-30 136.7 113 61.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-30 136.7 113 61.9
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.9e-30 136.0 112 52.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.5e-30 135.6 76 78.9
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.8e-28 129.4 78 73.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.1e-28 128.6 77 72.7
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.3e-28 127.9 82 70.7
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.2e-27 126.7 124 50.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.0e-26 121.3 110 50.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.4e-25 119.8 116 47.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.5e-25 119.0 82 68.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.2e-25 118.6 66 77.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-21 106.7 61 77.0
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 4.1e-20 101.7 64 70.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.0e-18 97.1 106 40.6
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.9e-17 92.8 116 41.4
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.2e-17 92.0 51 78.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.5e-14 83.2 108 36.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.0e-14 82.8 52 69.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.3e-13 80.1 110 34.5
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.1e-12 75.5 60 50.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.9e-10 68.9 95 37.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.7e-06 54.7 87 36.8


User provided reference genes

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