Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 6.6e-64 247.3 131 100.0
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 3.3e-63 245.0 131 99.2
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 5.8e-52 207.6 130 85.4
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 1.7e-40 169.5 131 73.3
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 2.5e-39 165.6 128 72.7
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.8e-38 161.4 127 72.4
BcaB06g28785 Brassica carinata HOM05D002924 ORTHO05D003122 6.9e-37 157.5 128 67.2
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 2.0e-36 156.0 129 68.2
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 1.7e-35 152.9 130 70.0
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 1.7e-35 152.9 130 70.0
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 4.2e-34 148.3 130 68.5
BcaB02g09523 Brassica carinata HOM05D002924 ORTHO05D003122 2.4e-29 132.5 128 61.7
BraA05t20050Z Brassica rapa HOM05D002924 ORTHO05D003122 2.4e-29 132.5 128 62.5
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 9.0e-29 130.6 128 61.7
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 9.0e-29 130.6 128 61.7
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 9.0e-29 130.6 128 61.7
A05p11050 Brassica napus HOM05D002924 ORTHO05D003122 2.0e-28 129.4 128 61.7
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 3.4e-28 128.6 129 58.9
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 5.5e-26 121.3 130 56.2
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 1.2e-25 120.2 134 55.2
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.3e-24 116.7 128 58.6
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 6.7e-24 114.4 132 56.1
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 6.7e-24 114.4 133 58.6
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 6.7e-24 114.4 133 58.6
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 6.7e-24 114.4 133 58.6
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 6.7e-24 114.4 133 58.6
BcaC01g05788 Brassica carinata HOM05D002924 ORTHO05D003122 1.9e-23 112.8 130 56.9
C03p22400 Brassica napus HOM05D002924 ORTHO05D003122 1.9e-23 112.8 130 56.9
BraA03t11175Z Brassica rapa HOM05D002924 ORTHO05D003122 2.5e-23 112.5 130 56.2
BolC3t14623H Brassica oleracea HOM05D002924 ORTHO05D003122 3.3e-23 112.1 130 56.2
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 1.6e-22 109.8 129 53.5
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 2.8e-22 109.0 127 52.0
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 2.8e-22 109.0 127 51.2
A03p19200 Brassica napus HOM05D002924 ORTHO05D003122 6.2e-22 107.8 131 55.7
BcaB01g06369 Brassica carinata HOM05D002924 ORTHO05D003122 8.1e-22 107.5 131 55.7
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 8.1e-22 107.5 126 48.4
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 8.1e-22 107.5 126 48.4
BcaC01g05787 Brassica carinata HOM05D002924 ORTHO05D003122 1.1e-21 107.1 126 57.1
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 1.1e-21 107.1 126 48.4
A09p36360 Brassica napus HOM05D002924 ORTHO05D003122 1.8e-21 106.3 127 50.4
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 5.3e-21 104.8 145 48.3
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 2.0e-20 102.8 141 53.2
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 3.4e-20 102.1 132 51.5
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.3e-19 100.1 128 53.9
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.9e-19 98.2 128 53.1
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.9e-18 96.3 128 53.1
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 7.1e-18 94.4 128 47.7
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 2.3e-16 89.4 150 44.0
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 6.7e-16 87.8 127 44.9
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.7e-16 87.4 127 44.9
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.1e-15 87.0 127 48.8
THA.LOC104820654 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 1.1e-15 87.0 136 43.4
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.3e-15 85.5 127 44.1
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 4.3e-15 85.1 131 45.0
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 4.3e-15 85.1 127 48.0
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 5.7e-15 84.7 128 45.3
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 7.4e-15 84.3 131 45.8
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-14 83.2 131 42.7
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 2.1e-14 82.8 139 43.9
BcaB04g17519 Brassica carinata HOM05D002924 ORTHO05D003122 3.7e-14 82.0 67 68.7
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 4.8e-14 81.6 139 43.2
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 4.8e-14 81.6 131 42.7
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 8.2e-14 80.9 130 43.1
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-13 80.5 133 43.6
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 3.1e-13 79.0 125 47.2
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 4.1e-13 78.6 136 47.8
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 4.1e-13 78.6 135 45.9
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 4.1e-13 78.6 126 43.7
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 4.1e-13 78.6 129 45.7
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 5.3e-13 78.2 129 42.6
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 9.0e-13 77.4 129 41.9
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 9.0e-13 77.4 129 41.9
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.5e-12 76.6 136 46.3
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.5e-12 76.6 129 41.1
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 2.0e-12 76.3 126 45.2
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 2.6e-12 75.9 132 41.7
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 2.6e-12 75.9 137 40.1
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.6e-12 75.9 132 44.7
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.6e-12 75.9 127 42.5
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 4.5e-12 75.1 90 51.1
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 4.5e-12 75.1 94 51.1
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 7.6e-12 74.3 126 43.7
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 1.0e-11 73.9 123 43.1
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.0e-11 73.9 108 47.2
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 1.0e-11 73.9 131 42.0
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.0e-11 73.9 135 42.2
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 1.0e-11 73.9 128 41.4
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.0e-11 73.9 95 48.4
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.0e-11 73.9 130 40.8
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 1.3e-11 73.6 133 41.4
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.3e-11 73.6 138 46.4
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 1.3e-11 73.6 139 41.7
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.7e-11 73.2 131 44.3
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 1.7e-11 73.2 133 40.6
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.2e-11 72.8 137 46.7
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.9e-11 72.4 102 51.0
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 3.8e-11 72.0 142 40.1
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 3.8e-11 72.0 137 40.9
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.8e-11 72.0 126 46.0
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 5.0e-11 71.6 99 47.5
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 5.0e-11 71.6 138 46.4
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 5.0e-11 71.6 140 42.9
C03p76460 Brassica napus HOM05D002924 ORTHO05D003122 6.5e-11 71.2 81 54.3
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 6.5e-11 71.2 157 36.3
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 6.5e-11 71.2 143 39.9
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 6.5e-11 71.2 128 42.2
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 8.4e-11 70.9 133 38.3
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 8.4e-11 70.9 131 39.7
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 1.1e-10 70.5 129 45.0
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 1.1e-10 70.5 136 41.9
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.4e-10 70.1 138 38.4
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 1.4e-10 70.1 94 45.7
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.9e-10 69.7 133 41.4
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 1.9e-10 69.7 126 42.9
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 2.5e-10 69.3 139 37.4
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 2.5e-10 69.3 132 36.4
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 2.5e-10 69.3 133 38.3
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 2.5e-10 69.3 141 41.8
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 2.5e-10 69.3 139 38.8
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 3.2e-10 68.9 131 41.2
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 3.2e-10 68.9 128 41.4
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 3.2e-10 68.9 133 36.1
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.2e-10 68.9 134 39.6
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 4.2e-10 68.6 133 36.8
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.5e-10 68.2 127 40.2
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 5.5e-10 68.2 130 40.0
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 5.5e-10 68.2 126 42.1
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 7.2e-10 67.8 135 36.3
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 7.2e-10 67.8 127 42.5
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 7.2e-10 67.8 129 42.6
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 7.2e-10 67.8 129 42.6
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 9.3e-10 67.4 127 42.5
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 9.3e-10 67.4 137 37.2
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 9.3e-10 67.4 133 38.3
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.2e-09 67.0 131 39.7
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.2e-09 67.0 133 42.1
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.2e-09 67.0 139 38.1
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.6e-09 66.6 136 40.4
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 1.6e-09 66.6 130 40.0
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 2.1e-09 66.2 107 41.1
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 2.1e-09 66.2 133 38.3
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 2.1e-09 66.2 129 38.8
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 2.7e-09 65.9 138 37.0
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 3.5e-09 65.5 126 42.9
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 3.5e-09 65.5 127 42.5
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 4.6e-09 65.1 110 43.6
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 4.6e-09 65.1 94 43.6
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 6.1e-09 64.7 128 39.8
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.9e-09 64.3 128 40.6
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.0e-08 63.9 128 39.8
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 1.3e-08 63.5 131 39.7
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.3e-08 63.5 126 41.3
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.8e-08 63.2 137 39.4
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 1.8e-08 63.2 143 35.7
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.8e-08 63.2 87 47.1
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 1.8e-08 63.2 127 39.4
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.8e-08 63.2 128 42.2
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 1.8e-08 63.2 130 36.2
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 2.3e-08 62.8 133 40.6
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 2.3e-08 62.8 141 39.0
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 2.3e-08 62.8 126 42.9
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 3.0e-08 62.4 145 36.6
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 3.0e-08 62.4 88 47.7
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 3.9e-08 62.0 123 40.7
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 3.9e-08 62.0 89 46.1
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 3.9e-08 62.0 98 44.9
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 5.1e-08 61.6 128 41.4
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 5.1e-08 61.6 125 38.4
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 6.7e-08 61.2 97 45.4
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 6.7e-08 61.2 139 38.8
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 6.7e-08 61.2 132 39.4
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 8.7e-08 60.8 102 41.2
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 1.5e-07 60.1 116 39.7
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 1.9e-07 59.7 140 40.0
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 2.5e-07 59.3 125 41.6
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 2.5e-07 59.3 128 39.8
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 2.5e-07 59.3 128 39.1
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 5.7e-07 58.2 137 36.5
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 5.7e-07 58.2 85 48.2
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 9.7e-07 57.4 140 37.1
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 1.3e-06 57.0 111 39.6
Sc05g0006100 Simmondsia chinensis HOM05D002924 ORTHO05D003122 1.3e-06 57.0 130 40.8
Manes.15G122700 Manihot esculenta HOM05D002924 ORTHO05D003122 1.6e-06 56.6 143 34.3
Sc05g0006110 Simmondsia chinensis HOM05D002924 ORTHO05D003122 1.6e-06 56.6 134 41.8
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 2.8e-06 55.8 135 32.6
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 4.8e-06 55.1 129 36.4
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 4.8e-06 55.1 130 33.1
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 8.2e-06 54.3 134 36.6


User provided reference genes

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