Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL258U10010 Arabidopsis lyrata HOM05D000143 ORTHO05D026756 8.0e-32 139.8 71 100.0
AL3G17780 Arabidopsis lyrata HOM05D000143 ORTHO05D000072 4.0e-31 137.5 71 98.6
AL3G17410 Arabidopsis lyrata HOM05D000143 ORTHO05D000072 7.3e-17 90.1 65 72.3
Aa31LG9G1360 Aethionema arabicum HOM05D000143 ORTHO05D000072 1.6e-16 89.0 57 77.2
Carub.0003s0621 Capsella rubella HOM05D000143 ORTHO05D000072 4.7e-16 87.4 56 75.0
Sp7g01680 Schrenkiella parvula HOM05D000143 ORTHO05D000072 6.2e-16 87.0 54 74.1
BcaB06g27466 Brassica carinata HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 71.7
A04p13180 Brassica napus HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 71.7
C04p46930 Brassica napus HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 71.7
BolC4t26287H Brassica oleracea HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 71.7
BraA04t16977Z Brassica rapa HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 71.7
THA.LOC104825289 Tarenaya hassleriana HOM05D000143 ORTHO05D000072 3.7e-13 77.8 53 67.9
Thhalv10027903m.g Eutrema salsugineum HOM05D000143 ORTHO05D000072 6.4e-13 77.0 54 72.2
Carub.0003s0919 Capsella rubella HOM05D000143 ORTHO05D000072 3.2e-12 74.7 62 59.7
AT5G40260 Arabidopsis thaliana HOM05D000143 ORTHO05D000072 3.5e-11 71.2 57 63.2
AL7G49720 Arabidopsis lyrata HOM05D000143 ORTHO05D000072 1.3e-10 69.3 57 61.4
Carub.0007s3537 Capsella rubella HOM05D000143 ORTHO05D000072 2.3e-10 68.6 57 61.4
TPR.G6077 Trifolium pratense HOM05D000143 ORTHO05D000072 8.6e-10 66.6 61 52.5
Cpa.g.c36848 Carica papaya HOM05D000143 ORTHO05D000072 1.1e-09 66.2 54 57.4
Carub.0003s0548 Capsella rubella HOM05D000143 ORTHO05D000072 1.5e-09 65.9 46 73.9
TPR.G2272 Trifolium pratense HOM05D000143 ORTHO05D000072 4.3e-09 64.3 61 50.8
Psat0s1760g0120 Pisum sativum HOM05D000143 ORTHO05D000072 5.6e-09 63.9 61 50.8
Phvul.004G017200 Phaseolus vulgaris HOM05D000143 ORTHO05D000072 7.3e-09 63.5 61 50.8
CARHR261830 Cardamine hirsuta HOM05D000143 ORTHO05D000072 9.5e-09 63.2 53 62.3
Glyma.19G009900 Glycine max HOM05D000143 ORTHO05D000072 9.5e-09 63.2 54 53.7
Medtr6g007637 Medicago truncatula HOM05D000143 ORTHO05D000072 1.2e-08 62.8 58 50.0
RcHm_v2.0_Chr2g0171121 Rosa chinensis HOM05D000143 ORTHO05D000072 1.2e-08 62.8 57 56.1
Carub.0006s2640 Capsella rubella HOM05D000143 ORTHO05D000072 1.6e-08 62.4 49 61.2
Phvul.004G017100 Phaseolus vulgaris HOM05D000143 ORTHO05D000072 1.6e-08 62.4 61 50.8
arahy.Tifrunner.gnm1.ann1.7WW6WM Arachis hypogaea HOM05D000143 ORTHO05D000072 2.1e-08 62.0 63 49.2
Lj1g0000433 Lotus japonicus HOM05D000143 ORTHO05D000072 2.1e-08 62.0 60 50.0
Lj1g0023252 Lotus japonicus HOM05D000143 ORTHO05D000072 2.1e-08 62.0 60 50.0
C05p60050 Brassica napus HOM05D000143 ORTHO05D000072 2.8e-08 61.6 51 56.9
Glyma.13G169700 Glycine max HOM05D000143 ORTHO05D000072 2.8e-08 61.6 54 53.7
Lj1g0006978 Lotus japonicus HOM05D000143 ORTHO05D000072 2.8e-08 61.6 63 46.0
Lj1g0023434 Lotus japonicus HOM05D000143 ORTHO05D000072 2.8e-08 61.6 63 46.0
Phvul.004G017400 Phaseolus vulgaris HOM05D000143 ORTHO05D000072 2.8e-08 61.6 54 53.7
Medtr6g007633 Medicago truncatula HOM05D000143 ORTHO05D000072 3.6e-08 61.2 60 48.3
COL.COLO4_13878 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.7e-08 60.8 61 49.2
arahy.Tifrunner.gnm1.ann1.555XQU Arachis hypogaea HOM05D000143 ORTHO05D000072 6.2e-08 60.5 54 51.9
arahy.Tifrunner.gnm1.ann1.D0QYDS Arachis hypogaea HOM05D000143 ORTHO05D000072 6.2e-08 60.5 54 51.9
arahy.Tifrunner.gnm1.ann1.K3L8DV Arachis hypogaea HOM05D000143 ORTHO05D000072 6.2e-08 60.5 54 51.9
BcaC05g29737 Brassica carinata HOM05D000143 ORTHO05D000072 6.2e-08 60.5 62 48.4
BcaC05g29739 Brassica carinata HOM05D000143 ORTHO05D000072 6.2e-08 60.5 62 48.4
BcaC05g29853 Brassica carinata HOM05D000143 ORTHO05D000072 8.1e-08 60.1 51 52.9
C05p60070 Brassica napus HOM05D000143 ORTHO05D000072 8.1e-08 60.1 51 52.9
BolC5t34658H Brassica oleracea HOM05D000143 ORTHO05D000072 8.1e-08 60.1 51 52.9
Ciclev10006675m.g Citrus clementina HOM05D000143 ORTHO05D000072 1.1e-07 59.7 57 54.4
Lj2g0022840 Lotus japonicus HOM05D000143 ORTHO05D000072 1.1e-07 59.7 58 48.3
Psat0s1760g0080 Pisum sativum HOM05D000143 ORTHO05D000072 1.1e-07 59.7 58 50.0
PGR083G0425 Punica granatum HOM05D000143 ORTHO05D000072 1.1e-07 59.7 65 50.8
VMungo0464G0302 Vigna mungo HOM05D000143 ORTHO05D000072 1.1e-07 59.7 54 53.7
Thecc.04G008300 Theobroma cacao HOM05D000143 ORTHO05D000072 1.4e-07 59.3 63 47.6
VMungo0464G1527 Vigna mungo HOM05D000143 ORTHO05D000072 1.4e-07 59.3 54 53.7
A05p40940 Brassica napus HOM05D000143 ORTHO05D000072 1.8e-07 58.9 51 51.0
BraA05t22823Z Brassica rapa HOM05D000143 ORTHO05D000072 1.8e-07 58.9 51 51.0
RcHm_v2.0_Chr1g0359391 Rosa chinensis HOM05D000143 ORTHO05D000072 1.8e-07 58.9 57 50.9
A05p40960 Brassica napus HOM05D000143 ORTHO05D000072 2.4e-07 58.5 59 50.8
Lalb_Chr06g0176071 Lupinus albus HOM05D000143 ORTHO05D000072 2.4e-07 58.5 54 53.7
Medtr6g007623 Medicago truncatula HOM05D000143 ORTHO05D000072 2.4e-07 58.5 60 45.0
arahy.Tifrunner.gnm1.ann1.6E534E Arachis hypogaea HOM05D000143 ORTHO05D000072 4.0e-07 57.8 54 51.9
arahy.Tifrunner.gnm1.ann1.78PE2K Arachis hypogaea HOM05D000143 ORTHO05D000072 4.0e-07 57.8 54 51.9
COL.COLO4_03545 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.0e-07 57.8 61 44.3
COL.COLO4_24992 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.0e-07 57.8 61 44.3
Glyma.19G009800 Glycine max HOM05D000143 ORTHO05D000072 4.0e-07 57.8 54 50.0
QL02p076738 Quercus lobata HOM05D000143 ORTHO05D000072 4.0e-07 57.8 57 52.6
RcHm_v2.0_Chr1g0360181 Rosa chinensis HOM05D000143 ORTHO05D000072 4.0e-07 57.8 57 49.1
CANSAT64G0585 Cannabis sativa HOM05D000143 ORTHO05D000072 5.2e-07 57.4 57 52.6
CiPaw.04G024500 Carya illinoinensis HOM05D000143 ORTHO05D000072 6.8e-07 57.0 57 52.6
Psat1g059320 Pisum sativum HOM05D000143 ORTHO05D000072 6.8e-07 57.0 54 50.0
Prupe.3G283400 Prunus persica HOM05D000143 ORTHO05D000072 6.8e-07 57.0 55 54.5
FAN05G1765 Fragaria x ananassa HOM05D000143 ORTHO05D000072 8.9e-07 56.6 53 52.8
RcHm_v2.0_Chr1g0349441 Rosa chinensis HOM05D000143 ORTHO05D000072 8.9e-07 56.6 57 49.1
Sed0010967 Sechium edule HOM05D000143 ORTHO05D000072 8.9e-07 56.6 54 59.3
Ciclev10016451m.g Citrus clementina HOM05D000143 ORTHO05D000072 1.2e-06 56.2 58 48.3
Os01g0605700 Oryza sativa ssp. japonica HOM05D000143 ORTHO05D000072 1.2e-06 56.2 57 54.4
Os01g0606000 Oryza sativa ssp. japonica HOM05D000143 ORTHO05D000072 1.2e-06 56.2 57 54.4
RcHm_v2.0_Chr5g0083341 Rosa chinensis HOM05D000143 ORTHO05D000072 1.2e-06 56.2 57 49.1
AagrBONN_evm.TU.Sc2ySwM_117.357 Anthoceros agrestis HOM05D000143 ORTHO05D000072 1.5e-06 55.8 54 55.6
arahy.Tifrunner.gnm1.ann1.6J07HI Arachis hypogaea HOM05D000143 ORTHO05D000072 1.5e-06 55.8 54 48.1
arahy.Tifrunner.gnm1.ann1.FJF87M Arachis hypogaea HOM05D000143 ORTHO05D000072 1.5e-06 55.8 54 48.1
COL.COLO4_13874 Corchorus olitorius HOM05D000143 ORTHO05D000072 1.5e-06 55.8 57 45.6
COL.COLO4_13875 Corchorus olitorius HOM05D000143 ORTHO05D000072 1.5e-06 55.8 57 45.6
COL.COLO4_13879 Corchorus olitorius HOM05D000143 ORTHO05D000072 1.5e-06 55.8 57 45.6
COL.COLO4_23517 Corchorus olitorius HOM05D000143 ORTHO05D000072 1.5e-06 55.8 57 45.6
FvH4_6g50390 Fragaria vesca HOM05D000143 ORTHO05D000072 1.5e-06 55.8 53 50.9
FAN05G5387 Fragaria x ananassa HOM05D000143 ORTHO05D000072 1.5e-06 55.8 53 50.9
FAN14G2661 Fragaria x ananassa HOM05D000143 ORTHO05D000072 1.5e-06 55.8 53 50.9
MD14G1183000 Malus domestica HOM05D000143 ORTHO05D000072 1.5e-06 55.8 57 52.6
Atru.chr13.1544 Acer truncatum HOM05D000143 ORTHO05D000072 2.0e-06 55.5 57 49.1
Atru.chr6.2195 Acer truncatum HOM05D000143 ORTHO05D000072 2.0e-06 55.5 57 49.1
ClCG10G014310 Citrullus lanatus HOM05D000143 ORTHO05D000072 2.0e-06 55.5 53 58.5
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 2.0e-06 55.5 57 47.4
Eucgr.J02204 Eucalyptus grandis HOM05D000143 ORTHO05D000072 2.0e-06 55.5 53 52.8
Sed0013791 Sechium edule HOM05D000143 ORTHO05D000072 2.0e-06 55.5 60 50.0
Solyc03g114200.4 Solanum lycopersicum HOM05D000143 ORTHO05D000072 2.0e-06 55.5 57 50.9
Sopen03g033280 Solanum pennellii HOM05D000143 ORTHO05D000072 2.0e-06 55.5 57 50.9
COL.COLO4_23520 Corchorus olitorius HOM05D000143 ORTHO05D000072 2.6e-06 55.1 57 45.6
BcaC01g04655 Brassica carinata HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 45.6
BcaC04g21085 Brassica carinata HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 43.9
A09p28300 Brassica napus HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 43.9
C03p35240 Brassica napus HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 45.6
C09p35880 Brassica napus HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 43.9
BolC9t56421H Brassica oleracea HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 43.9
BraA09t38399Z Brassica rapa HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 43.9
Eucgr.J02187 Eucalyptus grandis HOM05D000143 ORTHO05D000072 3.4e-06 54.7 57 47.4
FvH4_6g50580 Fragaria vesca HOM05D000143 ORTHO05D000072 3.4e-06 54.7 53 52.8
FAN05G0954 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.4e-06 54.7 53 52.8
FAN09G4223 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.4e-06 54.7 53 52.8
FAN14G2866 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.4e-06 54.7 53 52.8
AL5G17520 Arabidopsis lyrata HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 49.1
BcaB01g02732 Brassica carinata HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 43.9
BcaB05g22106 Brassica carinata HOM05D000143 ORTHO05D026756 4.4e-06 54.3 54 51.9
CDE05G2936 Ceratophyllum demersum HOM05D000143 ORTHO05D000072 4.4e-06 54.3 54 53.7
ClCG10G014290 Citrullus lanatus HOM05D000143 ORTHO05D000072 4.4e-06 54.3 60 48.3
COL.COLO4_05368 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 43.9
COL.COLO4_13877 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 43.9
Gohir.D04G054400 Gossypium hirsutum HOM05D000143 ORTHO05D000072 4.4e-06 54.3 54 51.9
Gorai.012G061100 Gossypium raimondii HOM05D000143 ORTHO05D000072 4.4e-06 54.3 54 51.9
MD17G1035200 Malus domestica HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 52.6
RcHm_v2.0_Chr1g0359411 Rosa chinensis HOM05D000143 ORTHO05D000072 4.4e-06 54.3 57 47.4
Sed0015930 Sechium edule HOM05D000143 ORTHO05D000072 4.4e-06 54.3 60 50.0
Sed0016718 Sechium edule HOM05D000143 ORTHO05D000072 4.4e-06 54.3 60 48.3
Thecc.04G008200 Theobroma cacao HOM05D000143 ORTHO05D000072 4.4e-06 54.3 54 51.9
HPP92_008296 Vanilla planifolia HOM05D000143 ORTHO05D000072 4.4e-06 54.3 54 51.9
BcaB07g30136 Brassica carinata HOM05D000143 ORTHO05D000072 5.8e-06 53.9 57 50.9
BcaC09g48621 Brassica carinata HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 48.1
A01p37630 Brassica napus HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 48.1
C01p47660 Brassica napus HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 48.1
BraA01t03824Z Brassica rapa HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 48.1
CARHR149640 Cardamine hirsuta HOM05D000143 ORTHO05D000072 5.8e-06 53.9 57 49.1
Thhalv10029447m.g Eutrema salsugineum HOM05D000143 ORTHO05D000072 5.8e-06 53.9 57 45.6
Gohir.A05G359800 Gossypium hirsutum HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 51.9
Nn1g00305 Nelumbo nucifera HOM05D000143 ORTHO05D000072 5.8e-06 53.9 57 47.4
Psat0s1760g0040 Pisum sativum HOM05D000143 ORTHO05D000072 5.8e-06 53.9 54 46.3
Potri.001G344300 Populus trichocarpa HOM05D000143 ORTHO05D000072 5.8e-06 53.9 57 49.1
MELO3C009950.2 Cucumis melo HOM05D000143 ORTHO05D000072 7.6e-06 53.5 53 54.7
CsaV3_3G042320 Cucumis sativus L. HOM05D000143 ORTHO05D000072 7.6e-06 53.5 53 54.7
Thhalv10004823m.g Eutrema salsugineum HOM05D000143 ORTHO05D000072 7.6e-06 53.5 64 48.4
RcHm_v2.0_Chr4g0413611 Rosa chinensis HOM05D000143 ORTHO05D000072 7.6e-06 53.5 57 45.6
Sp2g17020 Schrenkiella parvula HOM05D000143 ORTHO05D000072 7.6e-06 53.5 57 50.9
Aqoxy5G04310 Aquilegia oxysepala HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 49.1
AT3G28007 Arabidopsis thaliana HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 49.1
arahy.Tifrunner.gnm1.ann1.UY8AVE Arachis hypogaea HOM05D000143 ORTHO05D000072 9.9e-06 53.1 53 45.3
BcaC03g17498 Brassica carinata HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 50.9
C02p54600 Brassica napus HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 50.9
BolC2t11523H Brassica oleracea HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 50.9
CAN.G781.23 Capsicum annuum HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 49.1
Duzib187G1795 Durio zibethinus HOM05D000143 ORTHO05D000072 9.9e-06 53.1 61 45.9
Eucgr.J02190 Eucalyptus grandis HOM05D000143 ORTHO05D000072 9.9e-06 53.1 53 50.9
Lalb_Chr16g0390731 Lupinus albus HOM05D000143 ORTHO05D000072 9.9e-06 53.1 64 42.2
TWI56G0086 Tripterygium wilfordii HOM05D000143 ORTHO05D000072 9.9e-06 53.1 57 49.1


User provided reference genes

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