Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.9e-114 414.5 246 100.0
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.3e-100 367.9 244 93.0
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.2e-97 359.4 256 79.7
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 8.2e-92 340.9 257 83.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.9e-90 334.7 253 82.6
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.5e-85 320.1 261 73.2
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.5e-85 320.1 261 73.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 7.0e-83 311.2 260 74.6
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 7.0e-83 311.2 260 74.6
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.9e-81 305.8 259 74.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 7.2e-80 301.2 255 74.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.6e-79 300.1 254 76.8
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-74 283.9 247 67.6
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.3e-64 249.2 252 57.1
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.2e-60 236.5 269 55.0
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-56 224.2 247 57.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-52 210.7 244 54.1
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.1e-47 193.4 205 54.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 6.8e-46 188.3 197 51.8
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.9e-46 188.0 186 55.4
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 8.9e-46 188.0 258 46.5
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.5e-45 187.2 204 52.0
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.0e-45 186.8 192 54.7
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.6e-45 186.4 188 55.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.4e-45 186.0 191 54.5
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 5.8e-45 185.3 191 54.5
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 5.8e-45 185.3 198 51.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.7e-44 183.7 191 54.5
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.2e-44 183.3 209 50.2
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.7e-44 182.6 274 43.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 6.4e-44 181.8 191 53.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-43 180.6 191 52.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.4e-43 180.6 278 49.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.9e-43 180.3 184 51.6
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.1e-43 179.1 204 50.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 7.1e-43 178.3 193 49.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.6e-42 177.2 272 42.6
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.5e-42 176.0 195 49.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 4.6e-42 175.6 205 47.3
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.8e-42 174.9 274 42.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 7.8e-42 174.9 185 51.9
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-41 174.5 183 51.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.3e-41 173.3 184 54.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.3e-41 173.3 202 47.5
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 3.9e-41 172.6 246 47.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 8.6e-41 171.4 175 53.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 8.6e-41 171.4 259 42.9
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.9e-40 170.2 259 42.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.9e-40 170.2 248 43.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.5e-40 169.9 255 42.4
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.2e-39 167.5 188 52.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.8e-39 166.4 147 59.9
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.7e-39 165.6 196 50.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 8.1e-39 164.9 248 43.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.8e-38 163.7 186 47.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.8e-38 163.7 283 45.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.3e-38 163.3 199 51.8
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.2e-38 162.2 213 46.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 8.9e-38 161.4 197 48.2
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.2e-37 161.0 213 46.9
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.5e-37 160.6 244 46.3
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.0e-37 160.2 261 41.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.4e-37 159.5 194 47.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.4e-37 159.5 177 46.3
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 9.9e-37 157.9 279 41.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 9.9e-37 157.9 168 48.8
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.7e-36 157.1 230 45.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.8e-36 156.0 238 42.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.8e-36 156.0 151 53.0
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.4e-36 154.8 192 47.9
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-35 154.5 157 54.8
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.4e-35 154.1 154 53.2
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.4e-35 154.1 274 43.8
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.4e-35 153.3 175 48.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 3.2e-35 152.9 212 43.4
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.1e-35 152.5 135 58.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.1e-35 152.5 135 58.5
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 5.4e-35 152.1 156 54.5
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.6e-34 150.6 268 43.7
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 6.0e-34 148.7 144 52.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.0e-34 148.7 151 53.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.0e-34 148.7 209 46.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.0e-34 148.7 177 46.9
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 6.0e-34 148.7 198 48.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.8e-34 148.3 192 47.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.8e-34 148.3 156 53.8
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.3e-33 147.5 160 50.0
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.3e-33 147.5 141 55.3
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.7e-33 147.1 183 52.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.1e-33 145.6 187 48.1
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.5e-32 144.1 159 49.1
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.6e-32 141.4 172 45.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.6e-31 140.6 127 55.1
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.6e-31 140.6 143 53.8
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 6.2e-31 138.7 166 51.8
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.1e-30 137.9 149 48.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-30 137.9 140 57.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-30 137.5 275 37.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-30 137.5 275 37.5
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.4e-30 136.7 187 42.8
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 8.9e-30 134.8 129 51.9
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.5e-29 134.0 129 51.2
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.0e-29 133.7 232 40.5
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.6e-29 133.3 169 49.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-29 132.9 142 50.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 7.6e-29 131.7 237 36.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 9.9e-29 131.3 151 46.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 1.3e-28 131.0 191 40.8
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.2e-28 130.2 216 36.6
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.4e-27 125.6 260 36.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.4e-27 125.6 198 41.9
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-26 124.4 117 52.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.6e-26 124.0 198 42.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.7e-25 120.6 144 49.3
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 3.0e-25 119.8 140 45.7
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.0e-25 119.8 136 47.1
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.0e-25 119.8 136 47.1
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.3e-24 115.9 71 83.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 7.3e-24 115.2 270 35.2
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.6e-24 114.8 265 35.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.6e-24 114.8 140 46.4
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-23 113.2 182 37.4
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.1e-22 109.8 150 40.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.2e-21 107.8 254 35.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-20 104.0 107 55.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-20 104.0 140 47.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-19 101.3 103 53.4
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 3.9e-17 92.8 64 75.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.7e-17 92.0 95 53.7
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 8.7e-17 91.7 107 48.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.3e-16 89.7 84 53.6
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-15 87.4 85 54.1
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.8e-15 85.9 67 58.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.0e-14 82.8 172 34.3
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.0e-14 82.8 109 43.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.6e-13 80.1 80 50.0
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.2e-12 77.0 88 46.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-11 74.7 95 46.3
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.4e-11 74.3 135 34.8
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.1e-11 72.0 145 35.2


User provided reference genes

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