Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.7e-238 827.4 402 100.0
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 6.4e-235 817.0 402 98.5
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 2.0e-228 795.4 402 95.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.7e-227 792.3 402 95.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 9.3e-226 786.6 402 94.8
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 7.8e-225 783.5 402 93.8
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.5e-223 779.2 402 93.5
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.5e-223 779.2 402 93.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 9.6e-223 776.5 402 92.8
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.4e-218 762.7 402 91.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.9e-218 762.3 402 91.8
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.1e-217 758.8 402 91.3
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.3e-216 756.1 402 93.5
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 2.5e-207 725.3 402 86.6
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 2.1e-198 695.7 365 91.8
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 9.0e-197 690.3 402 81.1
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.7e-195 686.0 402 80.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-195 686.0 402 80.3
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.8e-195 684.9 402 79.6
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 6.5e-195 684.1 402 80.1
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 5.5e-194 681.0 402 79.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.3e-194 680.2 402 80.3
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.6e-193 679.5 402 81.1
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.1e-193 679.1 402 80.1
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 2.1e-193 679.1 402 80.3
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.7e-193 678.7 402 80.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.7e-193 678.7 402 80.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.8e-192 676.0 402 79.9
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.8e-192 676.0 403 80.9
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-191 673.3 402 79.1
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.5e-191 672.9 402 79.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-191 672.5 402 79.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 9.7e-191 670.2 402 79.6
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.7e-190 668.3 402 79.9
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.8e-189 666.0 402 79.6
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 2.0e-188 662.5 402 78.4
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.0e-188 662.5 402 78.6
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 5.9e-188 661.0 402 77.9
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 5.9e-188 661.0 402 78.1
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.7e-187 659.4 402 77.4
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 2.2e-187 659.1 402 78.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.8e-187 658.3 402 77.6
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 5.0e-187 657.9 402 77.6
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 5.0e-187 657.9 402 78.1
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 8.5e-187 657.1 403 77.4
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.1e-186 656.8 402 78.1
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.9e-186 656.0 402 77.9
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.5e-186 655.6 402 77.9
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 7.2e-186 654.1 402 77.1
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.1e-185 652.5 402 77.1
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.0e-184 650.2 415 74.9
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.4e-184 649.8 402 76.9
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.8e-184 649.4 402 77.1
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-184 649.4 415 74.9
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.9e-184 648.3 403 75.7
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 5.1e-184 647.9 402 77.1
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 8.8e-184 647.1 402 77.1
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.1e-183 646.7 402 76.9
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.5e-183 645.6 402 75.6
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.3e-183 645.2 402 75.1
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.3e-182 643.3 397 77.1
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 4.8e-182 641.3 402 75.9
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-181 640.2 402 76.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-181 639.8 402 75.6
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.4e-181 639.0 402 74.9
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 3.1e-181 638.6 402 75.1
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 1.2e-180 636.7 402 74.4
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 3.4e-180 635.2 402 75.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 5.9e-180 634.4 402 74.6
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 5.9e-180 634.4 403 75.4
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 7.7e-180 634.0 400 74.8
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.0e-179 633.6 404 75.7
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.0e-179 633.6 402 74.6
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.3e-179 633.3 402 74.1
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.7e-179 632.9 402 73.9
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-179 632.1 402 74.6
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.0e-179 631.3 402 73.4
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.5e-179 630.9 403 73.7
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-178 629.4 403 75.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.2e-178 628.6 402 74.4
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 5.5e-178 627.9 415 72.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 9.4e-178 627.1 402 74.1
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 3.6e-177 625.2 402 73.4
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 3.6e-177 625.2 402 75.9
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.8e-176 622.9 402 73.9
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.0e-175 619.4 404 73.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.6e-175 619.0 402 72.4
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 3.3e-175 618.6 403 73.9
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 7.4e-175 617.5 399 73.7
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 6.3e-174 614.4 401 72.3
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 6.3e-174 614.4 404 72.5
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.4e-173 612.5 402 71.1
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 4.1e-173 611.7 401 72.6
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.6e-172 609.8 377 76.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.7e-171 606.3 402 71.1
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.7e-171 606.3 377 76.1
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.0e-171 604.7 403 71.5
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 4.2e-170 601.7 402 70.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 7.2e-170 600.9 403 70.5
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.1e-169 599.4 456 65.1
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.7e-169 598.2 402 69.9
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 4.7e-169 598.2 399 71.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 6.1e-169 597.8 402 69.7
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 2.3e-168 595.9 402 68.2
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.0e-168 595.5 402 69.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 3.3e-167 592.0 397 70.3
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 3.3e-167 592.0 397 70.3
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.4e-167 591.7 405 72.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.5e-167 590.9 402 69.7
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 7.5e-167 590.9 399 70.7
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.7e-166 589.7 439 65.6
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.2e-166 589.3 402 68.9
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 5.3e-165 584.7 365 77.0
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.6e-164 583.2 366 76.0
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 2.7e-164 582.4 366 76.0
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.3e-163 580.1 401 70.8
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.6e-161 573.2 377 71.6
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.7e-161 572.4 363 74.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 5.2e-160 568.2 364 75.5
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.6e-153 546.6 403 63.5
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 6.8e-152 541.2 404 64.1
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 6.3e-150 534.6 406 64.8
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.6e-148 530.0 405 63.0
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.6e-147 524.2 415 62.9
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.8e-141 506.5 405 61.5
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 2.8e-137 492.7 402 61.4
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.7e-137 491.9 407 59.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 6.2e-129 464.9 379 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 9.8e-127 457.6 431 54.8
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.1e-122 444.1 405 54.6
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-122 443.4 388 57.0
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.9e-120 434.5 402 57.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 1.2e-119 434.1 399 55.9
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.4e-111 405.6 267 73.0
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 1.6e-108 397.1 268 71.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 3.5e-108 396.0 267 70.0
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.0e-107 394.4 305 64.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.9e-102 376.3 216 81.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.4e-101 373.2 306 58.2
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.6e-95 351.7 303 61.1
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 4.0e-88 329.3 446 42.8
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.4e-85 320.9 436 43.8
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 6.7e-59 232.3 228 54.8
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 2.6e-58 230.3 460 33.3
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.6e-47 194.5 420 32.1
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 2.7e-47 193.7 468 31.6
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.2e-46 190.7 165 60.0
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.5e-45 187.2 91 95.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.2e-44 184.9 118 79.7
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 9.8e-42 175.3 105 76.2
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 8.3e-41 172.2 96 80.2
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.4e-40 170.6 242 40.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-35 154.8 78 94.9
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 1.8e-35 154.5 169 48.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 3.4e-34 150.2 386 29.8
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.7e-31 140.6 157 47.8
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.3e-27 127.5 66 90.9
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 6.6e-22 109.4 79 63.3
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 9.2e-16 89.0 98 53.1
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 8.6e-14 82.4 40 90.0
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 8.1e-12 75.9 140 35.7
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 8.1e-12 75.9 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.4e-11 75.1 40 80.0
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 4.1e-08 63.5 33 75.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 5.4e-08 63.2 32 81.2
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 1.0e-06 58.9 233 24.9
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 2.3e-06 57.8 246 26.0
MD09G1146400 Malus domestica HOM05D001610 ORTHO05D001585 8.6e-06 55.8 71 35.2
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 8.6e-06 55.8 77 36.4


User provided reference genes

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