Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.4e-39 166.0 82 100.0
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.2e-32 142.1 80 90.0
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 6.5e-24 114.0 85 70.6
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.5e-20 102.8 75 77.3
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 4.4e-20 101.3 82 65.9
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.3e-19 99.8 73 69.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.2e-17 93.2 73 64.4
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.6e-17 92.0 87 63.2
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.0e-16 90.1 58 74.1
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 5.0e-16 87.8 79 63.3
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.8e-13 79.3 88 56.8
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 8.8e-13 77.0 75 60.0
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.4e-12 75.1 57 66.7
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.4e-12 75.1 57 66.7
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 4.4e-12 74.7 57 64.9
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.7e-11 72.8 57 63.2
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 2.2e-11 72.4 57 64.9
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.4e-10 69.7 72 52.8
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.8e-10 69.3 71 57.7
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.1e-10 68.6 57 57.9
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 3.1e-10 68.6 57 57.9
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.1e-10 67.0 68 57.4
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 9.1e-10 67.0 68 57.4
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.2e-09 66.6 82 50.0
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.0e-09 65.9 58 56.9
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 2.7e-09 65.5 75 56.0
AL6G40510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 4.5e-09 64.7 52 59.6
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 4.5e-09 64.7 67 55.2
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 7.7e-09 63.9 57 56.1
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 7.7e-09 63.9 57 57.9
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 7.7e-09 63.9 82 46.3
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.0e-08 63.5 76 56.6
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.0e-08 63.5 57 57.9
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.7e-08 62.8 82 46.3
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 3.8e-08 61.6 57 54.4
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 6.5e-08 60.8 57 56.1
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 6.5e-08 60.8 57 56.1
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.1e-07 60.1 81 46.9
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.1e-07 60.1 81 46.9
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-07 59.7 82 46.3
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 2.5e-07 58.9 81 42.0
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-07 58.9 82 46.3
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 2.5e-07 58.9 73 46.6
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 3.2e-07 58.5 73 45.2
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 3.2e-07 58.5 81 46.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 4.2e-07 58.2 79 43.0
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 5.5e-07 57.8 82 47.6
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 5.5e-07 57.8 57 54.4
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 5.5e-07 57.8 70 51.4
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 5.5e-07 57.8 57 52.6
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 5.5e-07 57.8 83 45.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 7.2e-07 57.4 57 52.6
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 7.2e-07 57.4 82 43.9
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 7.2e-07 57.4 85 43.5
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 7.2e-07 57.4 70 51.4
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 9.4e-07 57.0 81 44.4
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 9.4e-07 57.0 73 42.5
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.2e-06 56.6 74 47.3
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-06 56.2 84 46.4
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.6e-06 56.2 55 56.4
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.6e-06 56.2 50 56.0
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.6e-06 56.2 50 56.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.1e-06 55.8 83 44.6
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.1e-06 55.8 57 52.6
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.1e-06 55.8 81 45.7
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.1e-06 55.8 81 39.5
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 2.1e-06 55.8 83 44.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.7e-06 55.5 86 43.0
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.7e-06 55.5 83 44.6
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.7e-06 55.5 73 43.8
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 2.7e-06 55.5 84 41.7
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 3.6e-06 55.1 58 46.6
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 4.7e-06 54.7 58 51.7
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 6.1e-06 54.3 81 43.2


User provided reference genes

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