Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 9.0e-90 333.6 169 100.0
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.8e-88 328.2 169 98.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.1e-66 255.0 167 81.4
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.3e-61 239.2 178 73.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.7e-61 237.7 179 73.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.6e-60 235.7 168 75.6
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.3e-60 235.3 172 72.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 7.4e-60 234.2 173 74.6
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-57 226.9 161 72.7
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.2e-57 226.9 161 72.7
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.0e-56 223.8 164 71.3
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.7e-56 223.0 167 70.7
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.2e-56 222.6 168 67.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.2e-56 222.6 170 70.6
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.2e-56 222.6 170 70.6
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.2e-56 222.6 170 70.6
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.2e-56 222.6 147 80.3
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.0e-56 221.5 164 70.7
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.5e-55 219.2 167 69.5
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.3e-53 212.6 167 67.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-53 212.2 163 70.6
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.0e-53 212.2 163 70.6
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.0e-53 212.2 163 70.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.0e-53 211.8 177 64.4
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 5.2e-53 211.5 162 67.3
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 9.1e-50 200.7 177 61.6
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.1e-47 193.7 176 61.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.2e-45 184.9 162 59.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 8.8e-45 184.1 179 56.4
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.0e-44 183.0 178 58.4
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.0e-44 183.0 178 57.3
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 9.8e-44 180.6 179 55.3
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.7e-43 179.9 167 55.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.2e-43 179.5 169 56.2
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.2e-43 179.5 166 56.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.8e-43 178.3 180 54.4
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.3e-43 177.9 179 54.7
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 8.3e-43 177.6 165 58.2
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.1e-42 177.2 175 56.0
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 2.4e-42 176.0 169 53.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.1e-42 175.6 183 51.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 3.1e-42 175.6 173 54.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 3.1e-42 175.6 173 54.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 4.1e-42 175.3 174 53.4
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 4.1e-42 175.3 168 56.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 5.4e-42 174.9 174 54.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 5.4e-42 174.9 182 53.8
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 9.1e-42 174.1 183 52.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.1e-42 174.1 180 53.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.2e-41 173.7 180 53.3
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.0e-41 172.9 163 54.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.7e-41 172.6 177 54.8
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.5e-41 172.2 183 49.7
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 4.5e-41 171.8 188 52.7
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.5e-41 171.8 183 52.5
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.0e-40 170.6 183 51.4
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.0e-40 170.6 167 55.1
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.3e-40 170.2 174 52.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.7e-40 169.9 179 51.4
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 2.3e-40 169.5 184 51.1
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.8e-40 168.7 176 54.5
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.8e-40 168.7 174 54.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.8e-40 168.7 175 50.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 5.0e-40 168.3 186 51.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.5e-39 166.8 177 49.2
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.5e-39 166.8 183 52.5
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.5e-39 166.8 177 53.7
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.9e-39 166.4 164 53.0
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.9e-39 166.4 184 51.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.5e-39 166.0 176 54.0
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.3e-39 165.6 179 53.1
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.3e-39 165.6 173 56.1
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 4.2e-39 165.2 178 51.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 5.5e-39 164.9 177 49.2
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.5e-39 164.9 182 49.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 7.2e-39 164.5 180 50.0
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 7.2e-39 164.5 177 52.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.5e-39 164.1 179 52.0
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 9.5e-39 164.1 174 53.4
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 9.5e-39 164.1 177 52.0
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 9.5e-39 164.1 166 51.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.2e-38 163.7 175 55.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.2e-38 163.7 180 51.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.2e-38 163.7 184 50.0
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.2e-38 163.7 170 50.6
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.6e-38 163.3 175 48.6
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.1e-38 162.9 178 50.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.8e-38 162.5 182 50.5
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.6e-38 162.2 178 52.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 3.6e-38 162.2 165 52.1
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.7e-38 161.8 179 52.5
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.7e-38 161.8 177 54.8
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.1e-38 161.4 180 51.7
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.1e-38 161.4 187 49.7
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.0e-38 161.0 170 53.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.0e-37 160.6 170 52.4
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.0e-37 160.6 175 52.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.0e-37 160.6 177 50.3
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-37 160.2 179 50.3
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-37 160.2 183 49.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.8e-37 159.8 180 51.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-37 159.5 177 50.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.3e-37 159.5 182 48.4
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.3e-37 159.5 182 48.4
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.0e-37 159.1 182 49.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.2e-37 158.3 177 49.2
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 5.2e-37 158.3 189 47.6
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 5.2e-37 158.3 182 48.4
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 6.8e-37 157.9 180 49.4
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 6.8e-37 157.9 182 47.8
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.5e-36 156.8 185 45.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.5e-36 156.8 185 46.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 7.5e-36 154.5 181 50.8
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.5e-36 154.5 171 49.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.7e-35 153.3 156 52.6
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.7e-35 153.3 187 46.0
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 3.7e-35 152.1 176 46.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 6.3e-35 151.4 164 53.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 8.3e-35 151.0 171 49.7
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.8e-34 149.8 179 46.4
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.1e-34 149.1 181 43.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 9.2e-34 147.5 180 46.7
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 9.2e-34 147.5 181 45.9
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.7e-33 146.0 197 42.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.5e-33 145.6 188 46.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.5e-33 145.2 180 43.3
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 5.9e-33 144.8 187 45.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.3e-32 142.9 171 46.2
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.0e-32 141.7 189 44.4
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 6.6e-32 141.4 170 44.1
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.9e-31 139.8 181 40.3
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.9e-31 139.8 168 44.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.9e-31 139.8 168 50.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.2e-30 137.1 184 41.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.3e-29 132.9 185 45.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.2e-29 131.7 185 44.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.1e-26 124.0 164 40.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.0e-25 118.2 161 37.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.9e-21 104.4 184 34.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.8e-20 100.9 206 32.0
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.8e-20 100.9 206 32.0
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-19 98.6 77 61.0
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 8.6e-16 87.8 123 44.7
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.5e-15 84.3 94 44.7
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-13 80.1 206 24.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.8e-13 78.2 91 42.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-12 76.6 53 77.4
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-12 75.5 93 40.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.9e-12 74.3 97 39.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.9e-11 72.8 73 49.3
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.7e-11 72.4 68 45.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.7e-11 72.4 102 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 6.4e-11 71.6 129 34.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.4e-10 70.5 87 35.6
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-09 67.4 180 23.9
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.0e-09 65.1 206 21.8


User provided reference genes

Program Settings