Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 4.3e-111 405.2 222 100.0
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.4e-98 363.6 212 94.8
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.0e-96 357.5 219 83.1
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 5.1e-96 355.1 220 81.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.5e-87 326.2 221 75.6
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.0e-81 305.1 219 77.6
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.0e-80 304.3 219 77.6
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.8e-80 303.5 219 77.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.4e-77 293.1 219 74.9
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 2.4e-77 293.1 220 75.5
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 5.8e-76 288.5 214 66.4
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.0e-75 287.7 220 63.6
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.7e-75 287.0 209 72.7
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 6.5e-75 285.0 220 63.6
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 6.5e-75 285.0 241 58.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.4e-74 283.9 220 73.6
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.4e-74 283.9 208 69.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.5e-74 283.1 210 62.9
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.5e-74 283.1 210 62.9
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.2e-74 282.3 221 61.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.5e-74 282.0 214 73.4
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 3.5e-73 279.3 221 62.0
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.0e-73 278.5 228 61.8
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 3.0e-72 276.2 210 63.3
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 5.1e-72 275.4 223 61.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 5.1e-72 275.4 209 69.9
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.7e-72 274.6 206 65.0
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 8.7e-72 274.6 210 62.4
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 8.7e-72 274.6 210 67.1
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 3.3e-71 272.7 210 64.8
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.3e-71 272.3 203 64.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.7e-71 271.9 210 63.3
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 9.7e-71 271.2 202 71.8
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.3e-70 270.8 227 63.0
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.2e-70 270.0 222 63.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 3.7e-70 269.2 244 56.6
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.1e-69 267.7 229 61.1
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.4e-69 267.3 209 65.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.4e-69 267.3 232 66.4
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.8e-69 266.9 241 56.4
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.8e-69 266.9 209 65.1
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.3e-69 265.4 206 67.0
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 9.0e-69 264.6 220 65.5
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 9.0e-69 264.6 201 65.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 9.0e-69 264.6 209 60.3
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.2e-68 264.2 210 61.4
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.5e-68 263.8 221 64.3
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.5e-68 263.8 219 58.4
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.0e-68 263.5 221 57.9
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.6e-68 263.1 215 67.9
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.0e-67 261.2 226 58.8
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.3e-67 260.8 215 66.0
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.3e-67 260.8 208 66.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.9e-67 259.6 219 63.5
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.9e-67 259.6 222 56.3
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 5.0e-67 258.8 198 70.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 5.0e-67 258.8 209 58.9
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 5.0e-67 258.8 203 61.1
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.4e-66 257.3 224 58.0
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.9e-66 256.9 227 57.7
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.9e-66 256.9 209 71.3
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 7.2e-66 255.0 220 56.8
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.4e-66 254.6 216 57.4
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 9.4e-66 254.6 203 65.5
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.2e-65 254.2 207 59.4
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.6e-65 252.7 199 68.3
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.6e-65 252.3 221 62.9
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.4e-64 250.8 209 56.9
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 3.9e-64 249.2 203 60.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 5.1e-64 248.8 209 58.4
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 5.1e-64 248.8 202 58.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.5e-63 247.3 207 64.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.5e-63 247.3 206 60.2
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.7e-63 245.4 219 60.7
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 4.8e-62 242.3 217 62.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.8e-61 240.4 220 55.5
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 4.1e-61 239.2 210 62.4
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.3e-61 238.8 219 55.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.1e-61 238.0 206 64.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.1e-61 238.0 206 64.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.2e-60 237.7 227 60.4
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.2e-60 237.7 227 60.4
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.2e-60 237.7 225 54.2
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.0e-60 236.9 222 54.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.6e-60 236.5 206 65.5
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.4e-60 236.1 206 55.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.9e-60 235.3 215 53.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.7e-60 235.0 236 54.2
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 7.7e-60 235.0 214 62.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.0e-59 234.6 206 58.3
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.3e-59 234.2 192 59.4
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.2e-59 233.4 214 62.1
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.9e-59 233.0 199 66.3
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.8e-59 232.6 202 61.9
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 6.5e-59 231.9 214 61.2
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.5e-59 231.9 214 61.2
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 8.5e-59 231.5 229 57.2
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 3.2e-58 229.6 222 55.9
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 9.4e-58 228.0 207 51.7
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.2e-57 227.6 221 53.4
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-57 227.6 206 63.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-57 227.3 236 52.5
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.6e-57 227.3 236 52.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.1e-57 225.3 220 50.9
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 7.9e-57 224.9 202 55.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.8e-56 223.8 189 55.6
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 5.1e-56 222.2 215 60.0
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 5.7e-55 218.8 178 60.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.1e-53 214.5 235 48.9
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.8e-53 213.8 180 59.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.1e-53 213.0 204 60.8
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.9e-52 208.8 214 53.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 5.9e-52 208.8 214 53.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.0e-51 208.0 214 53.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.7e-51 207.2 214 53.3
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.8e-51 206.1 233 53.6
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.0e-51 205.7 219 53.9
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.5e-51 205.3 205 51.2
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.4e-50 204.1 209 57.4
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.4e-50 204.1 209 57.4
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 9.4e-50 201.4 185 53.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.7e-49 199.9 198 51.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.1e-49 198.7 198 50.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.0e-48 198.0 211 49.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 6.7e-48 195.3 162 55.6
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.7e-46 190.7 143 64.3
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-46 190.3 167 56.9
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-46 190.3 167 65.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-46 190.3 203 47.8
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 8.2e-46 188.3 152 71.1
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.4e-45 187.6 207 45.4
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.0e-43 181.4 179 59.8
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.5e-42 176.8 202 45.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.2e-41 174.5 179 52.0
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.2e-41 174.5 194 46.9
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.4e-40 171.0 194 46.9
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.2e-40 169.1 194 46.9
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.5e-39 167.5 205 44.9
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.6e-39 166.8 202 45.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.4e-37 161.0 171 55.6
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.2e-36 157.9 194 45.4
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 3.5e-36 156.4 205 41.5
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 5.9e-36 155.6 124 61.3
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.7e-36 155.2 205 40.0
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 7.7e-36 155.2 205 40.0
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.3e-35 154.5 191 39.8
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.7e-35 154.1 192 40.6
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.2e-35 153.7 233 38.2
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 6.5e-35 152.1 220 37.3
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.9e-34 150.6 192 39.6
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.2e-34 149.8 154 48.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 1.2e-33 147.9 226 37.2
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 6.1e-33 145.6 227 39.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.0e-32 143.3 192 40.6
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.3e-30 137.9 129 59.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.6e-28 131.0 197 37.6
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.6e-23 113.6 199 36.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 5.7e-23 112.5 138 44.9
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 4.1e-21 106.3 158 35.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.0e-21 105.5 163 35.6
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 4.0e-16 89.7 73 64.4
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-15 87.8 74 56.8
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.4e-13 80.5 65 60.0
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.0e-12 77.4 58 62.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.7e-12 77.0 76 52.6
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-11 74.7 62 54.8
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 7.3e-10 68.9 213 24.9
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-09 67.8 157 28.0
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 5.2e-08 62.8 212 25.9
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-07 61.6 52 63.5
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.0e-07 60.8 41 63.4


User provided reference genes

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