Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 9.5e-32 139.4 64 100.0
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 1.0e-30 136.0 63 98.4
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 1.0e-30 136.0 63 98.4
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 2.3e-30 134.8 63 96.8
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 2.3e-30 134.8 63 96.8
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 2.3e-30 134.8 63 96.8
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 5.2e-30 133.7 63 95.2
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 95.2
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 93.7
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 93.7
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 95.2
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 93.7
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 8.8e-30 132.9 63 93.7
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 1.2e-29 132.5 63 93.7
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 1.2e-29 132.5 63 93.7
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 1.2e-29 132.5 63 93.7
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 1.5e-29 132.1 63 93.7
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 1.5e-29 132.1 63 92.1
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 1.5e-29 132.1 63 95.2
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.5e-29 132.1 63 95.2
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 1.5e-29 132.1 63 93.7
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 2.0e-29 131.7 63 93.7
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 2.0e-29 131.7 63 93.7
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 2.0e-29 131.7 63 93.7
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 2.6e-29 131.3 63 92.1
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 3.4e-29 131.0 63 93.7
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.4e-29 131.0 63 93.7
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.4e-29 131.0 63 93.7
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 3.4e-29 131.0 63 93.7
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 4.4e-29 130.6 63 93.7
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 4.4e-29 130.6 63 93.7
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 4.4e-29 130.6 63 92.1
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 5.7e-29 130.2 63 92.1
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 7.5e-29 129.8 63 93.7
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 7.5e-29 129.8 63 93.7
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 7.5e-29 129.8 63 92.1
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 9.8e-29 129.4 63 90.5
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 9.8e-29 129.4 63 90.5
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 9.8e-29 129.4 63 90.5
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 9.8e-29 129.4 63 90.5
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 9.8e-29 129.4 62 93.5
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 9.8e-29 129.4 63 92.1
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 1.3e-28 129.0 63 90.5
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 1.3e-28 129.0 63 92.1
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 1.3e-28 129.0 63 92.1
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 1.3e-28 129.0 63 92.1
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 1.3e-28 129.0 63 92.1
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 92.1
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 90.5
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 92.1
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 90.5
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 92.1
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 1.7e-28 128.6 63 92.1
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 90.5
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 90.5
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 90.5
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 88.9
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 88.9
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 2.2e-28 128.3 63 88.9
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 2.8e-28 127.9 63 90.5
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 90.5
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 90.5
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 88.9
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 88.9
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 88.9
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 92.1
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 92.1
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 3.7e-28 127.5 63 92.1
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 4.9e-28 127.1 63 87.3
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 4.9e-28 127.1 63 90.5
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 4.9e-28 127.1 63 88.9
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 4.9e-28 127.1 63 88.9
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 4.9e-28 127.1 63 88.9
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 6.3e-28 126.7 63 88.9
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 8.3e-28 126.3 63 90.5
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 8.3e-28 126.3 63 90.5
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 8.3e-28 126.3 63 90.5
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 8.3e-28 126.3 63 88.9
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 1.1e-27 125.9 63 87.3
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 1.1e-27 125.9 63 90.5
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 1.8e-27 125.2 63 88.9
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 3.1e-27 124.4 65 89.2
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 7.0e-27 123.2 63 90.5
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 9.2e-27 122.9 63 85.7
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 9.2e-27 122.9 63 85.7
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 1.6e-26 122.1 63 85.7
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 3.5e-26 120.9 63 87.3
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 4.5e-26 120.6 63 84.1
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 4.5e-26 120.6 63 84.1
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 3.8e-25 117.5 63 85.7
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 5.0e-25 117.1 63 85.7
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 5.6e-24 113.6 63 84.1
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 2.8e-23 111.3 98 58.2
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 2.3e-22 108.2 63 71.4
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 7.5e-21 103.2 51 88.2
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 7.5e-21 103.2 62 69.4
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 9.8e-21 102.8 50 92.0
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 4.1e-19 97.4 47 93.6
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 2.0e-18 95.1 84 59.5
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 6.6e-17 90.1 86 53.5
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 6.8e-14 80.1 62 56.5
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 2.0e-13 78.6 39 92.3
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 1.3e-12 75.9 36 86.1
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.7e-12 75.5 130 36.9
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 4.1e-11 70.9 33 84.8
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 1.5e-08 62.4 32 75.0
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 8.1e-07 56.6 30 90.0


User provided reference genes

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